Variant report

Variant	rs12353283
Chromosome Location	chr9:13407036-13407037
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13403728..13406605-chr9:13406757..13409825,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MPDZ-5	chr9:13406379-13408432	ENSG00000270547.1

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10115277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961038	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961040	0.84[EUR][1000 genomes]
rs10961041	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961043	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000439	0.88[EUR][1000 genomes]
rs12339589	0.84[EUR][1000 genomes]
rs12339756	0.85[EUR][1000 genomes]
rs12340743	0.84[EUR][1000 genomes]
rs12343381	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12348720	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348887	0.84[EUR][1000 genomes]
rs12349249	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351125	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352551	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12352741	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1330126	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17190837	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17191126	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1927649	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1928644	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57935015	0.81[EUR][1000 genomes]
rs59092758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59700548	0.91[EUR][1000 genomes]
rs7027951	0.85[EUR][1000 genomes]
rs7045055	0.85[EUR][1000 genomes]
rs73410180	0.82[EUR][1000 genomes]
rs73410188	0.84[EUR][1000 genomes]
rs73410195	0.85[EUR][1000 genomes]
rs7849940	0.87[EUR][1000 genomes]
rs7857179	0.86[EUR][1000 genomes]
rs880023	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9987546	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13395400-13409600	Weak transcription	Colon Smooth Muscle	Colon

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