Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10115277	0.91[EUR][1000 genomes]
rs10961038	0.90[EUR][1000 genomes]
rs10961041	0.86[EUR][1000 genomes]
rs10961042	0.91[EUR][1000 genomes]
rs10961043	0.91[EUR][1000 genomes]
rs12000439	0.83[EUR][1000 genomes]
rs12339756	0.84[EUR][1000 genomes]
rs12343381	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348720	0.90[EUR][1000 genomes]
rs12349249	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12351125	0.90[EUR][1000 genomes]
rs12352551	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12352741	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12353283	0.91[EUR][1000 genomes]
rs17190837	0.90[EUR][1000 genomes]
rs17191126	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927649	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59092758	0.91[EUR][1000 genomes]
rs7027951	0.81[EUR][1000 genomes]
rs7045055	0.81[EUR][1000 genomes]
rs73410195	0.81[EUR][1000 genomes]
rs7849940	0.80[EUR][1000 genomes]
rs7857179	0.85[EUR][1000 genomes]
rs880023	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9987546	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13422600-13427800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13425000-13426200	Weak transcription	Fetal Lung	lung

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