Variant report

Variant	rs12000439
Chromosome Location	chr9:13422337-13422338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10115277	0.88[EUR][1000 genomes]
rs10961035	0.86[EUR][1000 genomes]
rs10961038	0.87[EUR][1000 genomes]
rs10961040	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10961041	0.84[EUR][1000 genomes]
rs10961042	0.88[EUR][1000 genomes]
rs10961043	0.88[EUR][1000 genomes]
rs12339589	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12339756	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12340743	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12343381	0.88[EUR][1000 genomes]
rs12348720	0.87[EUR][1000 genomes]
rs12348887	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12349249	0.89[EUR][1000 genomes]
rs12351125	0.89[EUR][1000 genomes]
rs12352551	0.87[EUR][1000 genomes]
rs12352741	0.89[EUR][1000 genomes]
rs12353283	0.88[EUR][1000 genomes]
rs17190837	0.87[EUR][1000 genomes]
rs17191126	0.88[EUR][1000 genomes]
rs1927649	0.89[EUR][1000 genomes]
rs2017195	0.86[EUR][1000 genomes]
rs34776649	0.82[ASN][1000 genomes]
rs57935015	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59092758	0.88[EUR][1000 genomes]
rs59700548	0.83[EUR][1000 genomes]
rs6474770	0.85[EUR][1000 genomes]
rs7027951	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7045055	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7048018	0.83[EUR][1000 genomes]
rs7048309	0.85[EUR][1000 genomes]
rs73410180	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73410188	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73410195	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7849940	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857179	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs880023	0.87[EUR][1000 genomes]
rs9987546	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13421600-13422600	Enhancers	Brain Substantia Nigra	brain
2	chr9:13421800-13422600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links