Variant report

Variant	rs10961104
Chromosome Location	chr9:13521585-13521586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10809963	0.92[ASN][1000 genomes]
rs10809964	0.92[ASN][1000 genomes]
rs10809965	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10961105	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961106	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961107	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961109	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122741	0.94[ASN][1000 genomes]
rs12554843	0.92[ASN][1000 genomes]
rs1413359	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60487641	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7855345	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13511200-13522200	Weak transcription	Psoas Muscle	Psoas
3	chr9:13517000-13521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:13520000-13522600	Enhancers	HUVEC	blood vessel
5	chr9:13520200-13522000	Weak transcription	Ovary	ovary
6	chr9:13520200-13524400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:13520600-13529200	Weak transcription	NHEK	skin
8	chr9:13520800-13521800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:13520800-13522200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:13521400-13522000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:13521400-13522000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:13521400-13522400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:13521400-13522400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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