Variant report

Variant	rs10961105
Chromosome Location	chr9:13522623-13522624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10809963	0.93[ASN][1000 genomes]
rs10809964	0.93[ASN][1000 genomes]
rs10809965	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10961104	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961107	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961109	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122741	0.95[ASN][1000 genomes]
rs12554843	0.93[ASN][1000 genomes]
rs1413359	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1413360	0.81[AMR][1000 genomes]
rs60487641	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7855345	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3438026	chr9:13522602-13523650	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13520200-13524400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:13520600-13529200	Weak transcription	NHEK	skin
4	chr9:13522000-13524000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:13522000-13524000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:13522400-13523600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:13522400-13523600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:13522600-13526000	Weak transcription	Ovary	ovary
9	chr9:13522600-13526200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:13522600-13529600	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links