Variant report

Variant	rs10961109
Chromosome Location	chr9:13526525-13526526
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10809963	0.99[ASN][1000 genomes]
rs10809964	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10809965	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10961104	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10961105	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10961106	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10961107	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1122741	0.97[ASN][1000 genomes]
rs12554843	0.99[ASN][1000 genomes]
rs1413359	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1413360	0.83[AMR][1000 genomes]
rs60487641	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7855345	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13520600-13529200	Weak transcription	NHEK	skin
3	chr9:13522600-13529600	Weak transcription	HUVEC	blood vessel
4	chr9:13524600-13529400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:13525800-13526600	Enhancers	Adipose Nuclei	Adipose
6	chr9:13526200-13526800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:13526400-13526600	Flanking Active TSS	Ovary	ovary
8	chr9:13526400-13527800	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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