Variant report

Variant	rs10963299
Chromosome Location	chr9:17833057-17833058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10429636	1.00[CEU][hapmap]
rs10738491	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10963295	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12380227	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16923365	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16935824	1.00[CEU][hapmap]
rs16935845	1.00[CEU][hapmap]
rs16935846	1.00[CEU][hapmap]
rs16935984	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2891113	1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs35911294	0.85[ASN][1000 genomes]
rs3808674	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4284123	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4382571	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4415416	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430174	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4477127	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4481712	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4531142	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4629969	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4642745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961448	0.90[ASN][1000 genomes]
rs61551917	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6475175	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475179	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475180	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024967	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7027918	0.81[ASN][1000 genomes]
rs73642315	0.81[ASN][1000 genomes]
rs73645334	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73645339	0.90[ASN][1000 genomes]
rs7847592	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867642	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871893	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7873468	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2761507	chr9:17810983-17901307	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17832000-17833800	Enhancers	Gastric	stomach
2	chr9:17832200-17833200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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