Variant report

Variant	rs10967700
Chromosome Location	chr9:27081807-27081808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10217151	1.00[AMR][1000 genomes]
rs10967641	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10967647	1.00[AMR][1000 genomes]
rs10967653	1.00[AMR][1000 genomes]
rs10967665	1.00[AMR][1000 genomes]
rs10967674	1.00[AMR][1000 genomes]
rs10967683	1.00[AMR][1000 genomes]
rs10967687	1.00[AMR][1000 genomes]
rs12005119	1.00[AMR][1000 genomes]
rs12339723	1.00[AMR][1000 genomes]
rs12344068	1.00[YRI][hapmap]
rs12349355	1.00[AMR][1000 genomes]
rs12350899	1.00[AMR][1000 genomes]
rs12351713	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12352625	1.00[AMR][1000 genomes]
rs4424351	1.00[AMR][1000 genomes]
rs56737191	1.00[AMR][1000 genomes]
rs56953734	1.00[AMR][1000 genomes]
rs58092948	1.00[AMR][1000 genomes]
rs58680265	1.00[AMR][1000 genomes]
rs59315745	1.00[AMR][1000 genomes]
rs60289603	1.00[AMR][1000 genomes]
rs60780510	1.00[AMR][1000 genomes]
rs61132701	1.00[AMR][1000 genomes]
rs61242705	1.00[AMR][1000 genomes]
rs61711179	1.00[AMR][1000 genomes]
rs7019249	1.00[AMR][1000 genomes]
rs73431877	1.00[AMR][1000 genomes]
rs73431887	1.00[AMR][1000 genomes]
rs73431889	1.00[AMR][1000 genomes]
rs73433945	1.00[AMR][1000 genomes]
rs73433990	1.00[AMR][1000 genomes]
rs73433991	1.00[AMR][1000 genomes]
rs73433995	1.00[AMR][1000 genomes]
rs73433999	1.00[AMR][1000 genomes]
rs73434000	1.00[AMR][1000 genomes]
rs73436004	1.00[AMR][1000 genomes]
rs73436005	1.00[AMR][1000 genomes]
rs73436006	1.00[AMR][1000 genomes]
rs73436010	1.00[AMR][1000 genomes]
rs73436023	1.00[AMR][1000 genomes]
rs73436032	1.00[AMR][1000 genomes]
rs73436034	1.00[AMR][1000 genomes]
rs73436056	1.00[AMR][1000 genomes]
rs73436060	1.00[AMR][1000 genomes]
rs73436064	1.00[AMR][1000 genomes]
rs73436066	1.00[AMR][1000 genomes]
rs73436067	1.00[AMR][1000 genomes]
rs73436068	1.00[AMR][1000 genomes]
rs73436072	1.00[AMR][1000 genomes]
rs73436090	1.00[AMR][1000 genomes]
rs73436096	1.00[AMR][1000 genomes]
rs73436099	1.00[AMR][1000 genomes]
rs73436100	1.00[AMR][1000 genomes]
rs73438204	1.00[AMR][1000 genomes]
rs73438216	1.00[AMR][1000 genomes]
rs73438218	1.00[AMR][1000 genomes]
rs73438220	1.00[AMR][1000 genomes]
rs73438225	1.00[AMR][1000 genomes]
rs73438229	1.00[AMR][1000 genomes]
rs73438237	1.00[AMR][1000 genomes]
rs73438239	1.00[AMR][1000 genomes]
rs73438242	1.00[AMR][1000 genomes]
rs73438244	1.00[AMR][1000 genomes]
rs73438246	1.00[AMR][1000 genomes]
rs73438247	1.00[AMR][1000 genomes]
rs73438253	1.00[AMR][1000 genomes]
rs73438257	1.00[AMR][1000 genomes]
rs73438264	1.00[AMR][1000 genomes]
rs73438269	1.00[AMR][1000 genomes]
rs73438272	1.00[AMR][1000 genomes]
rs73438284	1.00[AMR][1000 genomes]
rs73438297	1.00[AMR][1000 genomes]
rs73440228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024400-27082600	Weak transcription	Gastric	stomach
2	chr9:27024600-27082400	Weak transcription	Primary T cells from cord blood	blood
3	chr9:27024600-27083400	Weak transcription	Left Ventricle	heart
4	chr9:27024600-27085000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:27024600-27086800	Weak transcription	Right Ventricle	heart
6	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:27038000-27085000	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:27053800-27086800	Weak transcription	HSMM	muscle
9	chr9:27055200-27087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:27057400-27083000	Weak transcription	Liver	Liver
11	chr9:27060200-27085400	Weak transcription	Adipose Nuclei	Adipose
12	chr9:27068000-27087400	Weak transcription	Lung	lung
13	chr9:27072200-27087000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:27073000-27086800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:27074000-27085400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:27074200-27085400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:27076600-27085400	Weak transcription	Ovary	ovary
18	chr9:27076800-27083000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:27076800-27087200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:27077600-27086800	Weak transcription	Fetal Stomach	stomach
21	chr9:27078600-27086800	Weak transcription	Fetal Heart	heart
22	chr9:27079800-27087600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:27081600-27087000	Weak transcription	Hela-S3	cervix

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