Variant report

Variant	rs73438272
Chromosome Location	chr9:27089208-27089209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10217151	1.00[AMR][1000 genomes]
rs10967641	1.00[AMR][1000 genomes]
rs10967647	1.00[AMR][1000 genomes]
rs10967653	1.00[AMR][1000 genomes]
rs10967665	1.00[AMR][1000 genomes]
rs10967674	1.00[AMR][1000 genomes]
rs10967683	1.00[AMR][1000 genomes]
rs10967687	1.00[AMR][1000 genomes]
rs10967700	1.00[AMR][1000 genomes]
rs12005119	1.00[AMR][1000 genomes]
rs12339723	1.00[AMR][1000 genomes]
rs12349355	1.00[AMR][1000 genomes]
rs12350899	1.00[AMR][1000 genomes]
rs12351713	1.00[AMR][1000 genomes]
rs12352625	1.00[AMR][1000 genomes]
rs4424351	1.00[AMR][1000 genomes]
rs56737191	1.00[AMR][1000 genomes]
rs56953734	1.00[AMR][1000 genomes]
rs58092948	1.00[AMR][1000 genomes]
rs58680265	1.00[AMR][1000 genomes]
rs59315745	1.00[AMR][1000 genomes]
rs60289603	1.00[AMR][1000 genomes]
rs60780510	1.00[AMR][1000 genomes]
rs61132701	1.00[AMR][1000 genomes]
rs61242705	1.00[AMR][1000 genomes]
rs61711179	1.00[AMR][1000 genomes]
rs7019249	1.00[AMR][1000 genomes]
rs73431877	1.00[AMR][1000 genomes]
rs73431887	1.00[AMR][1000 genomes]
rs73431889	1.00[AMR][1000 genomes]
rs73433945	1.00[AMR][1000 genomes]
rs73433990	1.00[AMR][1000 genomes]
rs73433991	1.00[AMR][1000 genomes]
rs73433995	1.00[AMR][1000 genomes]
rs73433999	1.00[AMR][1000 genomes]
rs73434000	1.00[AMR][1000 genomes]
rs73436004	1.00[AMR][1000 genomes]
rs73436005	1.00[AMR][1000 genomes]
rs73436006	1.00[AMR][1000 genomes]
rs73436010	1.00[AMR][1000 genomes]
rs73436023	1.00[AMR][1000 genomes]
rs73436032	1.00[AMR][1000 genomes]
rs73436034	1.00[AMR][1000 genomes]
rs73436056	1.00[AMR][1000 genomes]
rs73436060	1.00[AMR][1000 genomes]
rs73436064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436066	1.00[AMR][1000 genomes]
rs73436067	1.00[AMR][1000 genomes]
rs73436068	1.00[AMR][1000 genomes]
rs73436072	1.00[AMR][1000 genomes]
rs73436090	1.00[AMR][1000 genomes]
rs73436096	1.00[AMR][1000 genomes]
rs73436099	1.00[AMR][1000 genomes]
rs73436100	1.00[AMR][1000 genomes]
rs73438204	1.00[AMR][1000 genomes]
rs73438216	1.00[AMR][1000 genomes]
rs73438218	1.00[AMR][1000 genomes]
rs73438220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438229	1.00[AMR][1000 genomes]
rs73438237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438253	1.00[AMR][1000 genomes]
rs73438257	1.00[AMR][1000 genomes]
rs73438264	1.00[AMR][1000 genomes]
rs73438269	1.00[AMR][1000 genomes]
rs73438284	1.00[AMR][1000 genomes]
rs73438297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73440209	1.00[AFR][1000 genomes]
rs73440228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:27086600-27091000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr9:27086800-27090600	Enhancers	HSMM	muscle
4	chr9:27087400-27090200	Enhancers	NH-A	brain
5	chr9:27087400-27092200	Enhancers	Osteobl	bone
6	chr9:27087800-27089800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:27087800-27090800	Enhancers	NHLF	lung
8	chr9:27088000-27089800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:27088400-27089400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:27088800-27089600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr9:27088800-27090600	Enhancers	HSMMtube	muscle
12	chr9:27088800-27090800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:27089200-27089400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:27089200-27089400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:27089200-27090000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:27089200-27090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links