Variant report

Variant	rs10967760
Chromosome Location	chr9:27182825-27182826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1322052	0.89[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.85[ASN][1000 genomes]
rs2224529	0.94[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs7025172	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7029924	0.88[ASN][1000 genomes]
rs7047856	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv6512	chr9:27155677-27200455	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892864	chr9:27176554-27296705	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv466335	chr9:27179244-27234029	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv613946	chr9:27179244-27234029	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27158200-27183600	Weak transcription	Lung	lung
3	chr9:27165400-27198200	Weak transcription	Ovary	ovary
4	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:27166000-27183600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:27166200-27192200	Weak transcription	Fetal Stomach	stomach
7	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:27174800-27183200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:27174800-27183800	Weak transcription	Right Ventricle	heart
11	chr9:27178400-27183600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:27178400-27197200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:27179400-27184800	Enhancers	NHEK	skin
14	chr9:27179600-27184200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:27179600-27191800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:27180000-27183400	Weak transcription	NH-A	brain
17	chr9:27180400-27183600	Weak transcription	Left Ventricle	heart
18	chr9:27180600-27184600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:27180800-27184200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:27180800-27191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:27180800-27230600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:27181000-27184200	Enhancers	HMEC	breast
23	chr9:27181400-27183800	Enhancers	Hela-S3	cervix
24	chr9:27181400-27184600	Enhancers	Osteobl	bone
25	chr9:27181600-27183000	Enhancers	Fetal Lung	lung
26	chr9:27181600-27183200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:27181600-27183600	Weak transcription	NHLF	lung
28	chr9:27181800-27184200	Genic enhancers	HUVEC	blood vessel
29	chr9:27182000-27183600	Enhancers	HSMMtube	muscle
30	chr9:27182000-27184200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:27182000-27184400	Enhancers	Stomach Mucosa	stomach
32	chr9:27182200-27183800	Weak transcription	Gastric	stomach
33	chr9:27182200-27192400	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:27182400-27183400	Weak transcription	Adipose Nuclei	Adipose
35	chr9:27182400-27183400	Weak transcription	HSMM	muscle
36	chr9:27182400-27183600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:27182400-27183800	Weak transcription	Pancreas	Pancrea
38	chr9:27182400-27183800	Weak transcription	Right Atrium	heart
39	chr9:27182400-27192200	Weak transcription	Aorta	Aorta
40	chr9:27182400-27192200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:27182600-27194000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:27182800-27183600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:27182800-27187800	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links