Variant report

Variant	rs2224529
Chromosome Location	chr9:27192036-27192037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10967760	0.94[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs10967767	0.82[JPT][hapmap]
rs1322052	0.94[CHB][hapmap]
rs2152065	0.82[JPT][hapmap]
rs2152066	0.82[JPT][hapmap]
rs3818282	0.94[JPT][hapmap]
rs7047856	0.89[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv6512	chr9:27155677-27200455	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892864	chr9:27176554-27296705	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv466335	chr9:27179244-27234029	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613946	chr9:27179244-27234029	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1009235	chr9:27189804-27196618	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27165400-27198200	Weak transcription	Ovary	ovary
3	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:27166200-27192200	Weak transcription	Fetal Stomach	stomach
5	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:27178400-27197200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:27180800-27230600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:27182200-27192400	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:27182400-27192200	Weak transcription	Aorta	Aorta
11	chr9:27182400-27192200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:27182600-27194000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:27184000-27192200	Weak transcription	Adipose Nuclei	Adipose
14	chr9:27184000-27197800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:27184200-27192600	Weak transcription	Lung	lung
16	chr9:27184200-27193800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:27184200-27194000	Weak transcription	Psoas Muscle	Psoas
18	chr9:27184200-27212600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:27191000-27192800	Weak transcription	Left Ventricle	heart
20	chr9:27191200-27192400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:27191800-27192400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:27191800-27193600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:27192000-27192200	Enhancers	Osteobl	bone
24	chr9:27192000-27192400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:27192000-27192800	Enhancers	Colon Smooth Muscle	Colon
26	chr9:27192000-27193200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:27192000-27196800	Enhancers	HUVEC	blood vessel

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