Variant report

Variant	rs1097111
Chromosome Location	chr3:43009419-43009420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1104018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11129986	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1346413	0.81[EUR][1000 genomes]
rs1427799	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1427801	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2650105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs530189	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs630718	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6789928	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs704889	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs704890	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs704894	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs704896	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs704900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs834180	0.90[EUR][1000 genomes]
rs834581	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs834695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311329	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
2	chr3:42978600-43020400	Weak transcription	Ovary	ovary
3	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
4	chr3:43003600-43011400	Weak transcription	Liver	Liver
5	chr3:43003600-43011600	Weak transcription	Fetal Intestine Small	intestine
6	chr3:43003800-43015400	Weak transcription	Fetal Stomach	stomach
7	chr3:43007200-43010000	Weak transcription	Fetal Thymus	thymus
8	chr3:43007200-43010000	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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