Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42925984..42928803-chr3:42932233..42934720,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1097111	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1104018	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11129986	0.90[EUR][1000 genomes]
rs1346413	0.95[EUR][1000 genomes]
rs1427801	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2650105	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28494652	0.89[EUR][1000 genomes]
rs530189	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs549709	0.84[YRI][hapmap]
rs630718	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6789928	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs704889	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs704890	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs704894	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs704896	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs704900	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7619740	0.95[EUR][1000 genomes]
rs7633062	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs834180	0.84[EUR][1000 genomes]
rs834581	0.81[EUR][1000 genomes]
rs834695	1.00[CEU][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9311329	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv965159	chr3:42927472-42932027	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42924000-42935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:42926400-42931800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:42926400-42933000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:42927200-42929400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:42927400-42929000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:42927600-42933200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:42928000-42929400	Enhancers	Duodenum Mucosa	Duodenum
8	chr3:42928000-42930200	Enhancers	Stomach Mucosa	stomach
9	chr3:42928200-42928800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:42928200-42929400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:42928200-42931000	Strong transcription	Placenta	Placenta
12	chr3:42928200-42931800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:42928400-42933200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:42928600-42929400	Enhancers	Fetal Intestine Small	intestine
15	chr3:42928600-42931600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:42928600-42931800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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