Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42985071..42987578-chr3:42988913..42992487,4	K562	blood:
2	chr3:42985071..42987578-chr3:42990431..42992487,3	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1097111	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1104018	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11129986	0.81[EUR][1000 genomes]
rs1346413	0.85[EUR][1000 genomes]
rs1427799	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1427801	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2650105	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs530189	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs549709	0.89[YRI][hapmap]
rs630718	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6789928	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs704889	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs704890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs704896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs704900	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs704902	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7619740	0.84[EUR][1000 genomes]
rs7633062	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs834179	0.86[AFR][1000 genomes]
rs834180	0.95[EUR][1000 genomes]
rs834581	0.90[EUR][1000 genomes]
rs834695	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9311329	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-42994400	Weak transcription	Fetal Stomach	stomach
2	chr3:42978400-42995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:42978400-43003000	Weak transcription	Fetal Intestine Small	intestine
4	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
5	chr3:42978600-43003000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:42978600-43020400	Weak transcription	Ovary	ovary
7	chr3:42981400-42995800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:42983600-43003400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:42985000-43003000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:42985200-42997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:42985200-43003000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
13	chr3:42989600-42994400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:42990600-42994400	Weak transcription	Stomach Mucosa	stomach

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