Variant report

Variant	rs10972948
Chromosome Location	chr9:3661448-3661449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511451	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10758389	0.89[ASN][1000 genomes]
rs10758391	0.89[ASN][1000 genomes]
rs10814428	0.89[ASN][1000 genomes]
rs10814458	0.89[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10972868	0.87[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs10972982	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10973011	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10973028	0.88[ASN][1000 genomes]
rs10973079	0.86[ASN][1000 genomes]
rs10973087	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10973090	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10973091	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10973103	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10973114	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11521449	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12350873	0.90[ASN][1000 genomes]
rs12378754	0.87[ASN][1000 genomes]
rs12379519	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12379966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16919461	0.85[ASN][1000 genomes]
rs17729056	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17729221	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1888650	0.86[ASN][1000 genomes]
rs62521638	0.85[ASN][1000 genomes]
rs62521639	0.85[ASN][1000 genomes]
rs62522514	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7043656	0.84[ASN][1000 genomes]
rs7466772	0.86[ASN][1000 genomes]
rs7470972	0.85[ASN][1000 genomes]
rs7873328	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv892092	chr9:3565211-3687942	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033417	chr9:3594189-3732530	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1021394	chr9:3594389-3728995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv892093	chr9:3613712-3696874	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
7	nsv892094	chr9:3631008-3783874	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv892095	chr9:3650174-3749196	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3647800-3678200	Weak transcription	Psoas Muscle	Psoas
2	chr9:3656600-3663400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:3658000-3673600	Weak transcription	Gastric	stomach
4	chr9:3659800-3676200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:3660800-3661800	Enhancers	Fetal Heart	heart
6	chr9:3660800-3662200	Enhancers	Adipose Nuclei	Adipose
7	chr9:3661200-3661600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:3661200-3661600	Enhancers	NH-A	brain
9	chr9:3661400-3661800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:3661400-3663800	Weak transcription	Fetal Lung	lung
11	chr9:3661400-3664200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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