Variant report

Variant	rs10976901
Chromosome Location	chr9:8266367-8266368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10976945	1.00[AMR][1000 genomes]
rs10976986	1.00[AMR][1000 genomes]
rs10977011	1.00[AMR][1000 genomes]
rs12335970	1.00[AMR][1000 genomes]
rs12337640	1.00[AMR][1000 genomes]
rs12338619	1.00[AMR][1000 genomes]
rs12339065	1.00[AMR][1000 genomes]
rs12339710	1.00[AMR][1000 genomes]
rs12342740	1.00[AMR][1000 genomes]
rs12342969	1.00[AMR][1000 genomes]
rs12343245	1.00[AMR][1000 genomes]
rs12343761	1.00[AMR][1000 genomes]
rs12345562	1.00[AMR][1000 genomes]
rs12345617	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351899	1.00[AMR][1000 genomes]
rs12352299	1.00[AMR][1000 genomes]
rs13439921	1.00[AMR][1000 genomes]
rs28585575	1.00[AMR][1000 genomes]
rs7035353	1.00[AMR][1000 genomes]
rs7035451	1.00[AMR][1000 genomes]
rs7045988	1.00[AMR][1000 genomes]
rs7046946	1.00[AMR][1000 genomes]
rs7048112	1.00[AMR][1000 genomes]
rs73410514	1.00[AMR][1000 genomes]
rs73428153	1.00[AMR][1000 genomes]
rs7871181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	esv3693381	chr9:8231940-8268051	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv613285	chr9:8244354-8270248	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv466123	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	nsv613286	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
10	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8255000-8267800	Weak transcription	Pancreas	Pancrea
2	chr9:8263400-8267000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:8263400-8267800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:8263400-8267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:8263400-8267800	Weak transcription	Psoas Muscle	Psoas
6	chr9:8263600-8266400	Weak transcription	Fetal Heart	heart
7	chr9:8263600-8267200	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:8263600-8267600	Weak transcription	Fetal Stomach	stomach
9	chr9:8263600-8268800	Weak transcription	Stomach Mucosa	stomach
10	chr9:8263800-8267800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:8264400-8274800	Weak transcription	Fetal Intestine Small	intestine
12	chr9:8265400-8270600	Enhancers	Fetal Lung	lung
13	chr9:8266000-8269000	Enhancers	Ovary	ovary
14	chr9:8266200-8266400	Enhancers	Small Intestine	intestine

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