Variant report

Variant	rs12337640
Chromosome Location	chr9:8314642-8314643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10976901	1.00[AMR][1000 genomes]
rs10976945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10976975	1.00[YRI][hapmap]
rs10976986	1.00[AMR][1000 genomes]
rs10977011	1.00[AMR][1000 genomes]
rs10977087	1.00[AMR][1000 genomes]
rs12335734	1.00[AMR][1000 genomes]
rs12335970	1.00[AMR][1000 genomes]
rs12336314	1.00[AMR][1000 genomes]
rs12336360	1.00[AMR][1000 genomes]
rs12338276	1.00[AMR][1000 genomes]
rs12338619	1.00[AMR][1000 genomes]
rs12338889	1.00[AMR][1000 genomes]
rs12339065	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12339710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341516	1.00[AMR][1000 genomes]
rs12342740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342969	1.00[AMR][1000 genomes]
rs12343245	1.00[AMR][1000 genomes]
rs12343761	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12345027	1.00[AMR][1000 genomes]
rs12345562	1.00[AMR][1000 genomes]
rs12345617	1.00[AMR][1000 genomes]
rs12346847	1.00[AMR][1000 genomes]
rs12347647	1.00[AMR][1000 genomes]
rs12350567	1.00[AMR][1000 genomes]
rs12351899	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12352299	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353003	1.00[AMR][1000 genomes]
rs13439921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28585575	1.00[AMR][1000 genomes]
rs3903827	1.00[AMR][1000 genomes]
rs7035353	1.00[AMR][1000 genomes]
rs7035451	1.00[AMR][1000 genomes]
rs7045988	1.00[AMR][1000 genomes]
rs7046946	1.00[AMR][1000 genomes]
rs7048112	1.00[AMR][1000 genomes]
rs73410514	1.00[AMR][1000 genomes]
rs73420445	1.00[AMR][1000 genomes]
rs73420453	1.00[AMR][1000 genomes]
rs73420457	1.00[AMR][1000 genomes]
rs73420468	1.00[AMR][1000 genomes]
rs73428153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871181	1.00[AMR][1000 genomes]
rs7873894	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8309200-8315600	Weak transcription	Fetal Kidney	kidney
2	chr9:8310800-8318600	Weak transcription	Fetal Brain Male	brain
3	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
4	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
5	chr9:8311000-8319600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:8311200-8315200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:8311200-8318600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:8312800-8322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:8314400-8319800	Weak transcription	Fetal Lung	lung
14	chr9:8314600-8314800	Enhancers	Brain Substantia Nigra	brain
15	chr9:8314600-8315200	Weak transcription	Brain Anterior Caudate	brain
16	chr9:8314600-8321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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