Variant report

Variant rs12345562
Chromosome Location chr9:8329795-8329796
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:8312200-8338200 Weak transcription Brain Angular Gyrus brain
2 chr9:8323400-8341600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr9:8323800-8329800 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr9:8323800-8341600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr9:8324000-8345000 Weak transcription Fetal Brain Male brain
6 chr9:8324400-8337400 Weak transcription Brain Germinal Matrix brain
7 chr9:8326400-8331000 Weak transcription Fetal Kidney kidney
8 chr9:8326800-8337400 Weak transcription Brain Cingulate Gyrus brain
9 chr9:8327200-8338000 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr9:8328000-8338000 Weak transcription Dnd41 blood
11 chr9:8328200-8338600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr9:8328400-8330200 Strong transcription Fetal Muscle Leg muscle
13 chr9:8328400-8330600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr9:8328800-8338200 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr9:8329000-8330000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr9:8329000-8330000 Strong transcription Fetal Adrenal Gland Adrenal Gland
17 chr9:8329000-8330200 Strong transcription Fetal Muscle Trunk muscle
18 chr9:8329000-8330600 Strong transcription Fetal Lung lung
19 chr9:8329200-8330000 ZNF genes & repeats Brain Substantia Nigra brain
20 chr9:8329200-8330200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr9:8329200-8330200 Enhancers Gastric stomach
22 chr9:8329200-8330200 Enhancers Stomach Mucosa stomach
23 chr9:8329200-8330400 Strong transcription Fetal Brain Female brain
24 chr9:8329200-8330400 Strong transcription Fetal Stomach stomach
25 chr9:8329200-8331200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr9:8329200-8331400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr9:8329400-8330000 Strong transcription Brain Inferior Temporal Lobe brain
28 chr9:8329400-8330200 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr9:8329400-8330200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
30 chr9:8329400-8330200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr9:8329400-8330200 Strong transcription Brain Anterior Caudate brain
32 chr9:8329400-8330200 Enhancers Fetal Thymus thymus
33 chr9:8329400-8330400 Strong transcription Cortex derived primary cultured neurospheres brain
34 chr9:8329400-8330400 ZNF genes & repeats HepG2 liver
35 chr9:8329600-8330000 Enhancers H1 Cell Line embryonic stem cell
36 chr9:8329600-8330000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr9:8329600-8330000 ZNF genes & repeats Primary hematopoietic stem cells blood
38 chr9:8329600-8330000 ZNF genes & repeats Aorta Aorta
39 chr9:8329600-8330200 Enhancers HUES48 Cell Line embryonic stem cell
40 chr9:8329600-8330200 Strong transcription Ovary ovary
41 chr9:8329600-8330200 Enhancers Pancreas Pancrea
42 chr9:8329600-8330400 Strong transcription Brain Hippocampus Middle brain

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