Variant report

Variant	rs10976910
Chromosome Location	chr9:8270248-8270249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10758950	0.80[EUR][1000 genomes]
rs10815818	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10976892	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10976895	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10976915	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976919	0.82[EUR][1000 genomes]
rs1157099	0.80[AMR][1000 genomes]
rs12551280	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12555489	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12682697	0.85[CEU][hapmap]
rs12685816	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1392508	0.80[AMR][1000 genomes]
rs1392509	0.80[AMR][1000 genomes]
rs1500306	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16927434	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1875241	0.80[AMR][1000 genomes]
rs28406601	0.80[AMR][1000 genomes]
rs3847282	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3847283	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3847284	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4008238	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4008239	0.92[EUR][1000 genomes]
rs7024924	0.80[AMR][1000 genomes]
rs7025712	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7035886	0.80[AMR][1000 genomes]
rs7042696	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7860127	0.80[AMR][1000 genomes]
rs7860201	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7864066	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs950832	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9785185	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv613285	chr9:8244354-8270248	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv466123	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv613286	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
9	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8264400-8274800	Weak transcription	Fetal Intestine Small	intestine
2	chr9:8265400-8270600	Enhancers	Fetal Lung	lung
3	chr9:8268800-8271000	Enhancers	Stomach Mucosa	stomach
4	chr9:8269400-8271000	Enhancers	HepG2	liver

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