Variant report
| Variant | rs12685816 |
|---|---|
| Chromosome Location | chr9:8290929-8290930 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10758950 | 0.82[EUR][1000 genomes] |
| rs10815818 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10976892 | 0.90[EUR][1000 genomes] |
| rs10976895 | 0.90[EUR][1000 genomes] |
| rs10976910 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10976915 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10976919 | 0.84[EUR][1000 genomes] |
| rs12551280 | 0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12555489 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1500306 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs16927434 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3847283 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3847284 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3847285 | 0.80[EUR][1000 genomes] |
| rs4008238 | 0.95[EUR][1000 genomes] |
| rs4008239 | 0.84[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4084051 | 0.80[EUR][1000 genomes] |
| rs7025712 | 0.82[EUR][1000 genomes] |
| rs7031618 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7042696 | 0.98[EUR][1000 genomes] |
| rs7860201 | 0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7864066 | 0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs950832 | 0.93[EUR][1000 genomes] |
| rs9785185 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv8414 | chr9:7827373-8511613 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016723 | chr9:8223541-8303017 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1031472 | chr9:8250901-8712547 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv892223 | chr9:8258921-8318948 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS | miRNA target site | n/a | inside rSNPs | diseases |
| 5 | nsv892224 | chr9:8263737-8338431 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS | miRNA target site | n/a | inside rSNPs | diseases |
| 6 | esv2762787 | chr9:8282283-8310704 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:8287800-8292000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
