Variant report

Variant	rs7860201
Chromosome Location	chr9:8288892-8288893
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10119545	0.81[AMR][1000 genomes]
rs10758950	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10815817	0.81[AMR][1000 genomes]
rs10815818	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10976892	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10976895	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10976910	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10976915	0.83[EUR][1000 genomes]
rs10976917	0.81[AMR][1000 genomes]
rs10976919	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10976922	0.84[AFR][1000 genomes]
rs10976923	0.85[AFR][1000 genomes]
rs1157099	0.82[AMR][1000 genomes]
rs12551280	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12555489	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12685816	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1392508	0.82[AMR][1000 genomes]
rs1392509	0.82[AMR][1000 genomes]
rs1472534	0.81[AMR][1000 genomes]
rs1500306	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1500307	0.81[AMR][1000 genomes]
rs1500308	0.81[AMR][1000 genomes]
rs16927434	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1875241	0.82[AMR][1000 genomes]
rs1909760	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28406601	0.82[AMR][1000 genomes]
rs3847282	0.82[ASN][1000 genomes]
rs3847283	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847284	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847285	0.82[AMR][1000 genomes]
rs4008238	0.96[EUR][1000 genomes]
rs4008239	0.93[EUR][1000 genomes]
rs4084051	0.82[AMR][1000 genomes]
rs7024924	0.82[AMR][1000 genomes]
rs7025712	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7031618	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7032230	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7035886	0.82[AMR][1000 genomes]
rs7042655	0.81[AMR][1000 genomes]
rs7042696	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7860127	0.82[AMR][1000 genomes]
rs7860372	0.81[AMR][1000 genomes]
rs7862136	0.81[AMR][1000 genomes]
rs7864066	0.96[EUR][1000 genomes]
rs7865119	0.81[AMR][1000 genomes]
rs7872172	0.80[EUR][1000 genomes]
rs7872818	0.81[AMR][1000 genomes]
rs7872830	0.81[AMR][1000 genomes]
rs950832	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9785185	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
6	esv2762787	chr9:8282283-8310704	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8286200-8290600	Enhancers	Fetal Intestine Large	intestine
2	chr9:8286200-8290600	Enhancers	Fetal Intestine Small	intestine
3	chr9:8287800-8292000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:8288000-8290000	Enhancers	Stomach Mucosa	stomach

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