Variant report
| Variant | rs10977582 |
|---|---|
| Chromosome Location | chr9:9212703-9212704 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10816096 | 1.00[JPT][hapmap] |
| rs10816097 | 1.00[JPT][hapmap] |
| rs10977574 | 1.00[CHB][hapmap] |
| rs10977575 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10977578 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10977579 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10977593 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977594 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977596 | 0.91[CEU][hapmap] |
| rs10977599 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977600 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10977604 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977608 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977614 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977615 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977653 | 1.00[JPT][hapmap] |
| rs10977666 | 1.00[JPT][hapmap] |
| rs10977667 | 1.00[JPT][hapmap] |
| rs10977673 | 1.00[JPT][hapmap] |
| rs12378276 | 1.00[JPT][hapmap] |
| rs12380457 | 1.00[JPT][hapmap] |
| rs1333123 | 1.00[JPT][hapmap] |
| rs17667848 | 0.85[CEU][hapmap] |
| rs17668986 | 1.00[JPT][hapmap] |
| rs4389999 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs4390000 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4621866 | 0.84[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs7030626 | 1.00[JPT][hapmap] |
| rs72696849 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7848905 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498066 | chr9:8961722-9486652 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv892249 | chr9:9026854-9377679 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv831505 | chr9:9072216-9277320 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv2761491 | chr9:9139951-9222892 | Weak transcription Flanking Active TSS Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv892252 | chr9:9164473-9476425 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv613303 | chr9:9187539-9225463 | Weak transcription Enhancers Active TSS | n/a | n/a | inside rSNPs | n/a |
| 7 | nsv1027042 | chr9:9208635-9300048 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
