Variant report

Variant	rs10977667
Chromosome Location	chr9:9329870-9329871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10816096	1.00[JPT][hapmap]
rs10816097	1.00[JPT][hapmap]
rs10977575	1.00[JPT][hapmap]
rs10977578	1.00[JPT][hapmap]
rs10977579	1.00[JPT][hapmap]
rs10977582	1.00[JPT][hapmap]
rs10977593	1.00[JPT][hapmap]
rs10977594	1.00[JPT][hapmap]
rs10977599	1.00[JPT][hapmap]
rs10977600	1.00[JPT][hapmap]
rs10977604	1.00[JPT][hapmap]
rs10977608	1.00[JPT][hapmap]
rs10977614	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs10977615	1.00[JPT][hapmap]
rs10977653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10977666	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10977673	1.00[JPT][hapmap]
rs12156461	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12378276	1.00[JPT][hapmap]
rs12379153	0.89[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12380457	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1333123	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17668986	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4389999	1.00[JPT][hapmap]
rs4390000	1.00[JPT][hapmap];0.82[MEX][hapmap]
rs7030626	1.00[JPT][hapmap]
rs72696849	0.89[ASN][1000 genomes]
rs7848905	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv892257	chr9:9304839-9349679	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv613306	chr9:9311838-9338417	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
13	nsv892259	chr9:9311838-9348102	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
14	nsv818683	chr9:9326805-9330772	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	nsv520832	chr9:9326805-9364637	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv524993	chr9:9327159-9330772	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9327200-9331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:9327200-9331600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:9329600-9330400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:9329600-9331800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:9329800-9330000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:9329800-9330200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:9329800-9330200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:9329800-9330600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:9329800-9333400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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