Variant report

Variant	rs10979051
Chromosome Location	chr9:110546149-110546150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110517822..110519331-chr9:110545952..110548715,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10979039	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979041	0.83[ASN][1000 genomes]
rs10979042	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1330150	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1576464	0.98[EUR][1000 genomes]
rs1952672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7021668	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110536600-110546600	Weak transcription	Spleen	Spleen
2	chr9:110541400-110547400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110542000-110547400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:110543600-110547800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110544200-110548000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:110544200-110549200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:110544600-110546200	Enhancers	K562	blood
8	chr9:110544800-110547800	Enhancers	Fetal Intestine Large	intestine
9	chr9:110544800-110549200	Enhancers	Placenta	Placenta
10	chr9:110545000-110546600	Weak transcription	Left Ventricle	heart
11	chr9:110545200-110546400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:110545200-110546400	Weak transcription	Osteobl	bone
13	chr9:110545200-110546600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:110545200-110546600	Weak transcription	HSMM	muscle
15	chr9:110545200-110546600	Weak transcription	HSMMtube	muscle
16	chr9:110545200-110547400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:110545400-110546400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:110545400-110546600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:110545800-110546200	Weak transcription	NHDF-Ad	bronchial
20	chr9:110545800-110546800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:110545800-110547000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:110546000-110546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:110546000-110546400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:110546000-110546600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:110546000-110546600	Enhancers	Fetal Muscle Trunk	muscle
26	chr9:110546000-110547600	Enhancers	Fetal Intestine Small	intestine
27	chr9:110546000-110549000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links