Variant report

Variant	rs1330150
Chromosome Location	chr9:110544407-110544408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10979034	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10979036	0.89[JPT][hapmap]
rs10979037	0.83[CHB][hapmap];0.91[CHD][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs10979039	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979041	0.89[ASN][1000 genomes]
rs10979042	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979051	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13293393	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1576464	0.98[EUR][1000 genomes]
rs1952672	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4979332	0.95[JPT][hapmap]
rs7021668	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857211	0.95[JPT][hapmap]
rs944173	0.83[CHB][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv6657	chr9:110533206-110545471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:110536600-110546600	Weak transcription	Spleen	Spleen
3	chr9:110541200-110544800	Weak transcription	HSMM	muscle
4	chr9:110541400-110547400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110542000-110544800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:110542000-110547400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:110543600-110547800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:110544000-110544600	Enhancers	NHDF-Ad	bronchial
9	chr9:110544200-110545200	Enhancers	HSMMtube	muscle
10	chr9:110544200-110546000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:110544200-110548000	Enhancers	Fetal Muscle Leg	muscle
12	chr9:110544200-110549200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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