Variant report

Variant	rs10979037
Chromosome Location	chr9:110514284-110514285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110498957..110503711-chr9:110512687..110515100,7	MCF-7	breast:
2	chr20:52714890..52716728-chr9:110512982..110515116,2	MCF-7	breast:
3	chr9:110506325..110509127-chr9:110512210..110514909,2	MCF-7	breast:
4	chr9:110512265..110514860-chr9:110532289..110535140,2	K562	blood:
5	chr9:110246450..110254025-chr9:110510483..110522079,28	MCF-7	breast:
6	chr9:110248851..110253829-chr9:110506998..110514501,12	MCF-7	breast:
7	chr9:110514110..110515685-chr9:110517940..110519497,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10979032	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979034	0.84[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979036	0.88[CEU][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs10979039	0.85[ASN][1000 genomes]
rs10979041	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13285373	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13293393	0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1330150	0.83[CHB][hapmap];0.91[CHD][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs1952672	0.89[ASN][1000 genomes]
rs4376551	0.88[ASN][1000 genomes]
rs4979332	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7021668	0.86[ASN][1000 genomes]
rs7857211	0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs944173	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110509400-110515600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110510400-110514600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:110510600-110514600	Enhancers	Adipose Nuclei	Adipose
4	chr9:110510600-110514600	Enhancers	Brain Hippocampus Middle	brain
5	chr9:110510600-110514600	Enhancers	Brain Substantia Nigra	brain
6	chr9:110510800-110514600	Enhancers	Placenta	Placenta
7	chr9:110510800-110514800	Enhancers	Fetal Muscle Leg	muscle
8	chr9:110510800-110515200	Enhancers	HMEC	breast
9	chr9:110511000-110514400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:110511200-110514400	Enhancers	Brain Anterior Caudate	brain
11	chr9:110511200-110514400	Enhancers	Fetal Lung	lung
12	chr9:110511400-110514400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:110511400-110514600	Enhancers	Fetal Brain Male	brain
14	chr9:110511400-110514800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:110511400-110514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:110511400-110514800	Enhancers	HSMM	muscle
17	chr9:110511400-110514800	Enhancers	NHLF	lung
18	chr9:110511600-110514600	Enhancers	NHDF-Ad	bronchial
19	chr9:110511600-110514800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:110511600-110514800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:110511600-110514800	Enhancers	HSMMtube	muscle
22	chr9:110511600-110515400	Enhancers	Colon Smooth Muscle	Colon
23	chr9:110511800-110514600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:110511800-110514600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:110511800-110514600	Enhancers	Fetal Muscle Trunk	muscle
26	chr9:110511800-110514600	Enhancers	Rectal Smooth Muscle	rectum
27	chr9:110511800-110514600	Enhancers	NH-A	brain
28	chr9:110511800-110514800	Enhancers	Liver	Liver
29	chr9:110511800-110514800	Enhancers	Colonic Mucosa	Colon
30	chr9:110511800-110515200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr9:110511800-110515200	Enhancers	Small Intestine	intestine
32	chr9:110511800-110515800	Enhancers	HUVEC	blood vessel
33	chr9:110512000-110514400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr9:110512000-110514400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr9:110512000-110514600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:110512000-110514600	Enhancers	Fetal Stomach	stomach
37	chr9:110512000-110514600	Enhancers	Right Atrium	heart
38	chr9:110512000-110514600	Flanking Active TSS	A549	lung
39	chr9:110512000-110515200	Enhancers	Fetal Intestine Large	intestine
40	chr9:110512000-110515400	Enhancers	Left Ventricle	heart
41	chr9:110512000-110515400	Enhancers	Stomach Mucosa	stomach
42	chr9:110512400-110514400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr9:110512400-110517200	Weak transcription	Lung	lung
44	chr9:110512400-110518000	Weak transcription	Spleen	Spleen
45	chr9:110512400-110520000	Weak transcription	Psoas Muscle	Psoas
46	chr9:110512600-110514800	Enhancers	HepG2	liver
47	chr9:110512600-110514800	Enhancers	Osteobl	bone
48	chr9:110512800-110514800	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr9:110512800-110514800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr9:110513000-110515000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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