Variant report

Variant	rs4376551
Chromosome Location	chr9:110505937-110505938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10115546	0.81[AMR][1000 genomes]
rs10979032	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979034	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10979037	0.88[ASN][1000 genomes]
rs10979041	0.81[ASN][1000 genomes]
rs13285373	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13293393	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4366140	0.87[AMR][1000 genomes]
rs4978563	0.85[AMR][1000 genomes]
rs4979329	0.84[AMR][1000 genomes]
rs4979332	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7470561	0.81[AMR][1000 genomes]
rs7857211	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs944173	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
2	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
5	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:110501000-110507000	Weak transcription	GM12878-XiMat	blood
7	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
8	chr9:110502600-110511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:110503000-110510400	Weak transcription	Right Ventricle	heart
10	chr9:110503000-110510600	Weak transcription	Left Ventricle	heart
11	chr9:110503000-110510800	Weak transcription	Placenta	Placenta
12	chr9:110503000-110511400	Weak transcription	NHLF	lung
13	chr9:110504400-110512000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:110505200-110509200	Weak transcription	Spleen	Spleen
15	chr9:110505200-110510600	Weak transcription	Adipose Nuclei	Adipose
16	chr9:110505200-110510800	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:110505200-110511400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:110505200-110514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:110505600-110509800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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