Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:110506724..110508935-chr9:110510279..110512239,2	K562	blood:
2	chr9:110248851..110253829-chr9:110506998..110514501,12	MCF-7	breast:
3	chr9:110506325..110509127-chr9:110512210..110514909,2	MCF-7	breast:
4	chr9:110506724..110509091-chr9:110510279..110512249,3	K562	blood:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10115546	0.85[AMR][1000 genomes]
rs10979032	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10979034	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979036	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs10979037	0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979041	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13285373	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13293393	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1330150	0.95[JPT][hapmap]
rs1952672	0.80[ASN][1000 genomes]
rs2030640	0.82[AMR][1000 genomes]
rs2030641	0.83[AMR][1000 genomes]
rs41527445	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs4366140	0.83[AMR][1000 genomes]
rs4376551	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4978563	0.89[AMR][1000 genomes]
rs4979329	0.88[AMR][1000 genomes]
rs4979332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7470561	0.85[AMR][1000 genomes]
rs944173	0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
2	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
3	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
5	chr9:110502600-110511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:110503000-110510400	Weak transcription	Right Ventricle	heart
7	chr9:110503000-110510600	Weak transcription	Left Ventricle	heart
8	chr9:110503000-110510800	Weak transcription	Placenta	Placenta
9	chr9:110503000-110511400	Weak transcription	NHLF	lung
10	chr9:110504400-110512000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:110505200-110509200	Weak transcription	Spleen	Spleen
12	chr9:110505200-110510600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:110505200-110510800	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:110505200-110511400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:110505200-110514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:110505600-110509800	Weak transcription	Ovary	ovary
17	chr9:110507600-110509400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:110507800-110509200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr9:110507800-110513000	Weak transcription	GM12878-XiMat	blood

Quick Search: