Variant report

Variant	rs13293393
Chromosome Location	chr9:110519859-110519860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10979032	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10979034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10979037	0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979039	0.85[ASN][1000 genomes]
rs10979041	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13285373	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1330150	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1952672	0.88[ASN][1000 genomes]
rs41527445	0.80[CHB][hapmap]
rs4376551	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4979332	0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7021668	0.85[ASN][1000 genomes]
rs7857211	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs944173	0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110512400-110520000	Weak transcription	Psoas Muscle	Psoas
2	chr9:110514600-110523200	Weak transcription	K562	blood
3	chr9:110514800-110522600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:110515400-110523000	Weak transcription	Left Ventricle	heart
5	chr9:110517800-110523000	Weak transcription	Small Intestine	intestine
6	chr9:110518000-110523600	Weak transcription	Adipose Nuclei	Adipose
7	chr9:110518200-110522200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:110518200-110523000	Weak transcription	Stomach Mucosa	stomach
9	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:110518400-110521800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:110518400-110522600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:110518400-110522800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:110518400-110523000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:110518800-110521200	Weak transcription	Spleen	Spleen
15	chr9:110519400-110522200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr9:110519400-110522800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:110519600-110521200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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