Variant report

Variant	rs10979036
Chromosome Location	chr9:110513805-110513806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10979032	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979034	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979037	0.88[CEU][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979039	0.85[ASN][1000 genomes]
rs10979041	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13285373	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13293393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1330150	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1952672	0.89[ASN][1000 genomes]
rs4376551	0.88[ASN][1000 genomes]
rs4979332	0.92[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7021668	0.86[ASN][1000 genomes]
rs7857211	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs944173	1.00[CEU][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110505200-110514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110509400-110515600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110510000-110514200	Enhancers	Brain Germinal Matrix	brain
4	chr9:110510400-110514600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:110510600-110514600	Enhancers	Adipose Nuclei	Adipose
6	chr9:110510600-110514600	Enhancers	Brain Hippocampus Middle	brain
7	chr9:110510600-110514600	Enhancers	Brain Substantia Nigra	brain
8	chr9:110510800-110514000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr9:110510800-110514600	Enhancers	Placenta	Placenta
10	chr9:110510800-110514800	Enhancers	Fetal Muscle Leg	muscle
11	chr9:110510800-110515200	Enhancers	HMEC	breast
12	chr9:110511000-110514400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:110511200-110514400	Enhancers	Brain Anterior Caudate	brain
14	chr9:110511200-110514400	Enhancers	Fetal Lung	lung
15	chr9:110511400-110514400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:110511400-110514600	Enhancers	Fetal Brain Male	brain
17	chr9:110511400-110514800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:110511400-110514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:110511400-110514800	Enhancers	HSMM	muscle
20	chr9:110511400-110514800	Enhancers	NHLF	lung
21	chr9:110511600-110514600	Enhancers	NHDF-Ad	bronchial
22	chr9:110511600-110514800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr9:110511600-110514800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:110511600-110514800	Enhancers	HSMMtube	muscle
25	chr9:110511600-110515400	Enhancers	Colon Smooth Muscle	Colon
26	chr9:110511800-110514000	Enhancers	Fetal Brain Female	brain
27	chr9:110511800-110514000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr9:110511800-110514600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr9:110511800-110514600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:110511800-110514600	Enhancers	Fetal Muscle Trunk	muscle
31	chr9:110511800-110514600	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:110511800-110514600	Enhancers	NH-A	brain
33	chr9:110511800-110514800	Enhancers	Liver	Liver
34	chr9:110511800-110514800	Enhancers	Colonic Mucosa	Colon
35	chr9:110511800-110515200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr9:110511800-110515200	Enhancers	Small Intestine	intestine
37	chr9:110511800-110515800	Enhancers	HUVEC	blood vessel
38	chr9:110512000-110514200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:110512000-110514400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr9:110512000-110514400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:110512000-110514600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:110512000-110514600	Enhancers	Fetal Stomach	stomach
43	chr9:110512000-110514600	Enhancers	Right Atrium	heart
44	chr9:110512000-110514600	Flanking Active TSS	A549	lung
45	chr9:110512000-110515200	Enhancers	Fetal Intestine Large	intestine
46	chr9:110512000-110515400	Enhancers	Left Ventricle	heart
47	chr9:110512000-110515400	Enhancers	Stomach Mucosa	stomach
48	chr9:110512400-110514400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:110512400-110517200	Weak transcription	Lung	lung
50	chr9:110512400-110518000	Weak transcription	Spleen	Spleen

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