Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110503474..110505849-chr9:110510284..110512558,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10979034	0.81[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979036	0.95[JPT][hapmap]
rs10979037	0.83[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979041	0.85[ASN][1000 genomes]
rs13285373	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13293393	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1330150	0.95[JPT][hapmap]
rs1952672	0.81[ASN][1000 genomes]
rs2030640	0.82[AMR][1000 genomes]
rs2030641	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs41527445	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4366140	0.87[AMR][1000 genomes]
rs4376551	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4978563	0.81[AMR][1000 genomes]
rs4979329	0.80[AMR][1000 genomes]
rs4979332	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7470561	0.81[AMR][1000 genomes]
rs7857211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs944173	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
2	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
5	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:110501000-110507000	Weak transcription	GM12878-XiMat	blood
7	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
8	chr9:110502600-110511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:110503000-110510400	Weak transcription	Right Ventricle	heart
10	chr9:110503000-110510600	Weak transcription	Left Ventricle	heart
11	chr9:110503000-110510800	Weak transcription	Placenta	Placenta
12	chr9:110503000-110511400	Weak transcription	NHLF	lung
13	chr9:110504000-110505600	Enhancers	Ovary	ovary
14	chr9:110504400-110512000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:110505200-110505800	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:110505200-110509200	Weak transcription	Spleen	Spleen
17	chr9:110505200-110510600	Weak transcription	Adipose Nuclei	Adipose
18	chr9:110505200-110510800	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:110505200-110511400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:110505200-110514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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