Variant report

Variant	rs944173
Chromosome Location	chr9:110514626-110514627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110498957..110503711-chr9:110512687..110515100,7	MCF-7	breast:
2	chr20:52714890..52716728-chr9:110512982..110515116,2	MCF-7	breast:
3	chr9:110300257..110302612-chr9:110514562..110517473,2	MCF-7	breast:
4	chr9:110506325..110509127-chr9:110512210..110514909,2	MCF-7	breast:
5	chr9:110514515..110516747-chr9:111303982..111305554,2	MCF-7	breast:
6	chr9:110512265..110514860-chr9:110532289..110535140,2	K562	blood:
7	chr9:110246450..110254025-chr9:110510483..110522079,28	MCF-7	breast:
8	chr9:110514110..110515685-chr9:110517940..110519497,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10979032	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979034	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979036	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs10979037	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979039	0.82[ASN][1000 genomes]
rs10979041	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13285373	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13293393	0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330150	0.83[CHB][hapmap];0.88[CHD][hapmap];0.83[MEX][hapmap]
rs1952672	0.86[ASN][1000 genomes]
rs4376551	0.86[ASN][1000 genomes]
rs4979332	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7021668	0.83[ASN][1000 genomes]
rs7857211	0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110509400-110515600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110510800-110514800	Enhancers	Fetal Muscle Leg	muscle
3	chr9:110510800-110515200	Enhancers	HMEC	breast
4	chr9:110511400-110514800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:110511400-110514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:110511400-110514800	Enhancers	HSMM	muscle
7	chr9:110511400-110514800	Enhancers	NHLF	lung
8	chr9:110511600-110514800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:110511600-110514800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:110511600-110514800	Enhancers	HSMMtube	muscle
11	chr9:110511600-110515400	Enhancers	Colon Smooth Muscle	Colon
12	chr9:110511800-110514800	Enhancers	Liver	Liver
13	chr9:110511800-110514800	Enhancers	Colonic Mucosa	Colon
14	chr9:110511800-110515200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr9:110511800-110515200	Enhancers	Small Intestine	intestine
16	chr9:110511800-110515800	Enhancers	HUVEC	blood vessel
17	chr9:110512000-110515200	Enhancers	Fetal Intestine Large	intestine
18	chr9:110512000-110515400	Enhancers	Left Ventricle	heart
19	chr9:110512000-110515400	Enhancers	Stomach Mucosa	stomach
20	chr9:110512400-110517200	Weak transcription	Lung	lung
21	chr9:110512400-110518000	Weak transcription	Spleen	Spleen
22	chr9:110512400-110520000	Weak transcription	Psoas Muscle	Psoas
23	chr9:110512600-110514800	Enhancers	HepG2	liver
24	chr9:110512600-110514800	Enhancers	Osteobl	bone
25	chr9:110512800-110514800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr9:110512800-110514800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr9:110513000-110515000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:110513000-110515000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr9:110513000-110515400	Enhancers	Hela-S3	cervix
30	chr9:110513200-110515400	Enhancers	Fetal Intestine Small	intestine
31	chr9:110513400-110514800	Enhancers	Duodenum Mucosa	Duodenum
32	chr9:110513600-110515400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:110513800-110514800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr9:110513800-110514800	Enhancers	Aorta	Aorta
35	chr9:110513800-110514800	Enhancers	NHEK	skin
36	chr9:110513800-110515400	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr9:110514000-110514800	Enhancers	Stomach Smooth Muscle	stomach
38	chr9:110514000-110515200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:110514000-110515600	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr9:110514400-110514800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:110514400-110514800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:110514400-110514800	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr9:110514400-110516800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:110514400-110517400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr9:110514600-110515600	Enhancers	A549	lung
46	chr9:110514600-110516200	Weak transcription	Esophagus	oesophagus
47	chr9:110514600-110516800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:110514600-110517000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:110514600-110517000	Weak transcription	Placenta	Placenta
50	chr9:110514600-110517200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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