Variant report

Variant	rs10979143
Chromosome Location	chr9:110729149-110729150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10979132	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979133	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979134	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979136	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979145	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979147	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979148	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065550	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10979143	SPZ1	trans	parietal	SCAN
rs10979143	OR13C8	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110724200-110730200	Weak transcription	Stomach Mucosa	stomach
2	chr9:110726000-110729600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:110726800-110738400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:110727000-110738200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:110727600-110732200	Weak transcription	Gastric	stomach
6	chr9:110728000-110729200	Weak transcription	Esophagus	oesophagus
7	chr9:110728800-110729200	Enhancers	Brain Hippocampus Middle	brain
8	chr9:110728800-110729200	Enhancers	Brain Substantia Nigra	brain
9	chr9:110728800-110730200	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:110729000-110730600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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