Variant report

Variant	rs10979147
Chromosome Location	chr9:110731929-110731930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10979132	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979133	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979134	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979136	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979141	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979145	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065550	0.91[ASN][1000 genomes]
rs9696425	0.94[AFR][1000 genomes]
rs9697123	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110726800-110738400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:110727000-110738200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:110727600-110732200	Weak transcription	Gastric	stomach
4	chr9:110730200-110736200	Enhancers	Stomach Mucosa	stomach
5	chr9:110730800-110732000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:110730800-110733000	Weak transcription	Small Intestine	intestine
7	chr9:110730800-110733400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:110730800-110734600	Weak transcription	Fetal Stomach	stomach
9	chr9:110731000-110739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:110731200-110732400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:110731400-110733400	Enhancers	Esophagus	oesophagus
12	chr9:110731400-110734400	Enhancers	Duodenum Mucosa	Duodenum
13	chr9:110731600-110733000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:110731800-110732200	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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