Variant report

Variant	rs10979145
Chromosome Location	chr9:110731392-110731393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10979132	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979133	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979134	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979136	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979141	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979147	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979148	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065550	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10979145	SPZ1	trans	parietal	SCAN
rs10979145	OR13C8	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110726800-110738400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:110727000-110738200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:110727600-110732200	Weak transcription	Gastric	stomach
4	chr9:110730000-110731400	Enhancers	Brain Germinal Matrix	brain
5	chr9:110730200-110731400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:110730200-110736200	Enhancers	Stomach Mucosa	stomach
7	chr9:110730600-110731600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:110730600-110731600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr9:110730800-110731600	Enhancers	NHEK	skin
10	chr9:110730800-110732000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:110730800-110733000	Weak transcription	Small Intestine	intestine
12	chr9:110730800-110733400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:110730800-110734600	Weak transcription	Fetal Stomach	stomach
14	chr9:110731000-110731400	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr9:110731000-110731400	Weak transcription	Esophagus	oesophagus
16	chr9:110731000-110739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:110731200-110732400	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links