Variant report

Variant	rs10979190
Chromosome Location	chr9:110845216-110845217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10979189	0.95[AMR][1000 genomes]
rs10979191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979192	1.00[AMR][1000 genomes]
rs10979195	0.89[AMR][1000 genomes]
rs10979197	0.89[AMR][1000 genomes]
rs10979198	0.89[AMR][1000 genomes]
rs10979199	0.89[AMR][1000 genomes]
rs10979202	0.89[AMR][1000 genomes]
rs10979204	0.89[AMR][1000 genomes]
rs10979206	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12235917	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12236285	0.89[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12237102	0.84[AMR][1000 genomes]
rs1412437	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110828400-110846800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:110837400-110848800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:110838600-110845400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:110840400-110848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:110841000-110845400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:110841800-110845600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:110841800-110845600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:110845200-110845400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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