Variant report

Variant	rs12235917
Chromosome Location	chr9:110853907-110853908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10979189	0.84[AMR][1000 genomes]
rs10979190	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10979191	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10979192	0.89[AMR][1000 genomes]
rs10979195	1.00[AMR][1000 genomes]
rs10979197	1.00[AMR][1000 genomes]
rs10979198	1.00[AMR][1000 genomes]
rs10979199	1.00[AMR][1000 genomes]
rs10979202	1.00[AMR][1000 genomes]
rs10979204	1.00[AMR][1000 genomes]
rs10979206	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979215	0.81[ASN][1000 genomes]
rs12236285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237102	0.95[AMR][1000 genomes]
rs1412437	0.89[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110847200-110855800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:110848200-110856200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:110848800-110854200	Weak transcription	K562	blood
4	chr9:110851000-110857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:110851400-110855400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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