Variant report

Variant	rs10982065
Chromosome Location	chr9:98523740-98523741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1093398	0.89[GIH][hapmap]
rs10981787	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981895	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10981907	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10981996	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684994	0.83[EUR][1000 genomes]
rs467337	0.92[GIH][hapmap]
rs60729070	0.93[ASN][1000 genomes]
rs60945775	0.83[EUR][1000 genomes]
rs7042092	0.80[GIH][hapmap]
rs718340	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72756383	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853659	0.81[EUR][1000 genomes]
rs7869096	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10982065	C9orf130	cis	cerebellum	SCAN
rs10982065	FBP1	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:98518200-98526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98518200-98528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:98519800-98526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:98520000-98526200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:98520000-98526200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:98520000-98526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:98520000-98526200	Weak transcription	HepG2	liver
10	chr9:98520000-98527200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98520800-98524800	Weak transcription	GM12878-XiMat	blood
12	chr9:98521800-98526400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:98523000-98524000	Enhancers	Fetal Stomach	stomach
14	chr9:98523200-98523800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:98523200-98523800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:98523200-98523800	Enhancers	Brain Hippocampus Middle	brain
17	chr9:98523200-98523800	Enhancers	Fetal Lung	lung
18	chr9:98523400-98524200	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:98523400-98526400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:98523400-98526400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:98523600-98526200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:98523600-98526400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:98523600-98526600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:98523600-98526800	Weak transcription	Colon Smooth Muscle	Colon

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