Variant report

Variant	rs60945775
Chromosome Location	chr9:98516829-98516830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98498306..98500300-chr9:98515480..98517828,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1093398	0.97[ASN][1000 genomes]
rs10981787	0.99[EUR][1000 genomes]
rs10981895	0.95[EUR][1000 genomes]
rs10981996	0.83[EUR][1000 genomes]
rs10982065	0.83[EUR][1000 genomes]
rs28684994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60729070	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs700967	0.97[ASN][1000 genomes]
rs718340	0.99[EUR][1000 genomes]
rs72756383	0.98[EUR][1000 genomes]
rs7853659	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7869096	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98519000	Enhancers	Ovary	ovary
2	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:98515200-98517200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:98515200-98517800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:98515200-98517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:98515200-98518000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr9:98515200-98518400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:98515200-98520000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:98515200-98520400	Enhancers	Fetal Stomach	stomach
10	chr9:98515400-98517000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr9:98515400-98518200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:98515400-98518600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:98515600-98518400	Enhancers	Right Atrium	heart
14	chr9:98515800-98517200	Enhancers	Placenta	Placenta
15	chr9:98515800-98517400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:98515800-98517600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:98515800-98517600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:98515800-98517600	Enhancers	Fetal Heart	heart
19	chr9:98515800-98517800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:98515800-98518800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr9:98516000-98517000	Enhancers	Brain Cingulate Gyrus	brain
22	chr9:98516000-98517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:98516000-98517600	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:98516200-98517800	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:98516200-98518200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
26	chr9:98516200-98518200	Enhancers	Left Ventricle	heart
27	chr9:98516200-98518400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
28	chr9:98516200-98520000	Enhancers	Fetal Lung	lung
29	chr9:98516400-98517000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
30	chr9:98516400-98517000	Enhancers	Stomach Mucosa	stomach
31	chr9:98516400-98517200	Enhancers	Small Intestine	intestine
32	chr9:98516400-98517800	Weak transcription	Right Ventricle	heart
33	chr9:98516400-98518200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:98516400-98518200	Enhancers	HepG2	liver
35	chr9:98516400-98518600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr9:98516400-98519000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:98516400-98520200	Enhancers	Adipose Nuclei	Adipose
38	chr9:98516600-98517000	Weak transcription	Pancreas	Pancrea
39	chr9:98516600-98517600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr9:98516600-98518200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
41	chr9:98516600-98518400	Enhancers	Spleen	Spleen
42	chr9:98516600-98518600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:98516600-98519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:98516600-98519200	Weak transcription	Brain Anterior Caudate	brain
45	chr9:98516600-98519400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:98516600-98519400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr9:98516600-98519400	Weak transcription	NHLF	lung
48	chr9:98516600-98519600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:98516600-98519600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine

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