Variant report

Variant	rs7853659
Chromosome Location	chr9:98517074-98517075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98516863..98518461-chr9:98547406..98550399,2	MCF-7	breast:
2	chr9:98498306..98500300-chr9:98515480..98517828,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10981787	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981895	0.93[EUR][1000 genomes]
rs10981996	0.81[EUR][1000 genomes]
rs10982065	0.81[EUR][1000 genomes]
rs28684994	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60729070	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60945775	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs718340	0.97[EUR][1000 genomes]
rs72756383	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7869096	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98519000	Enhancers	Ovary	ovary
2	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:98515200-98517200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:98515200-98517800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:98515200-98517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:98515200-98518000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr9:98515200-98518400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:98515200-98520000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:98515200-98520400	Enhancers	Fetal Stomach	stomach
10	chr9:98515400-98518200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:98515400-98518600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:98515600-98518400	Enhancers	Right Atrium	heart
13	chr9:98515800-98517200	Enhancers	Placenta	Placenta
14	chr9:98515800-98517400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:98515800-98517600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:98515800-98517600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:98515800-98517600	Enhancers	Fetal Heart	heart
18	chr9:98515800-98517800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:98515800-98518800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr9:98516000-98517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:98516000-98517600	Enhancers	Fetal Muscle Trunk	muscle
22	chr9:98516200-98517800	Enhancers	Stomach Smooth Muscle	stomach
23	chr9:98516200-98518200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
24	chr9:98516200-98518200	Enhancers	Left Ventricle	heart
25	chr9:98516200-98518400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
26	chr9:98516200-98520000	Enhancers	Fetal Lung	lung
27	chr9:98516400-98517200	Enhancers	Small Intestine	intestine
28	chr9:98516400-98517800	Weak transcription	Right Ventricle	heart
29	chr9:98516400-98518200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:98516400-98518200	Enhancers	HepG2	liver
31	chr9:98516400-98518600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr9:98516400-98519000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:98516400-98520200	Enhancers	Adipose Nuclei	Adipose
34	chr9:98516600-98517600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr9:98516600-98518200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
36	chr9:98516600-98518400	Enhancers	Spleen	Spleen
37	chr9:98516600-98518600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:98516600-98519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:98516600-98519200	Weak transcription	Brain Anterior Caudate	brain
40	chr9:98516600-98519400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:98516600-98519400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr9:98516600-98519400	Weak transcription	NHLF	lung
43	chr9:98516600-98519600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:98516600-98519600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine
46	chr9:98516800-98517200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
47	chr9:98516800-98517200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
48	chr9:98516800-98517800	Weak transcription	Fetal Kidney	kidney
49	chr9:98516800-98518800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
50	chr9:98516800-98519000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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