Variant report

Variant	rs10983405
Chromosome Location	chr9:100472042-100472043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100470983..100474278-chr9:100563427..100567562,3	MCF-7	breast:
2	chr9:100468636..100471244-chr9:100471475..100473548,2	MCF-7	breast:
3	chr9:100461347..100463609-chr9:100470360..100473150,2	MCF-7	breast:
4	chr9:100471544..100473232-chr9:100656611..100658428,2	K562	blood:
5	chr9:100469221..100472408-chr9:100472563..100475555,3	K562	blood:
6	chr9:100471666..100473790-chr9:100684234..100685883,3	MCF-7	breast:
7	chr9:100466290..100468242-chr9:100471348..100474178,4	K562	blood:
8	chr9:100471241..100474154-chr9:100481493..100483041,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000266608	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10116536	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119687	0.98[EUR][1000 genomes]
rs10120102	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123969	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983424	0.95[EUR][1000 genomes]
rs10983428	0.95[EUR][1000 genomes]
rs12344605	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346336	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347253	0.94[EUR][1000 genomes]
rs12349178	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350221	0.95[EUR][1000 genomes]
rs12350946	0.95[EUR][1000 genomes]
rs16923269	0.97[EUR][1000 genomes]
rs16923677	0.99[EUR][1000 genomes]
rs16923719	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923815	0.93[EUR][1000 genomes]
rs17335265	1.00[ASN][1000 genomes]
rs28376250	0.90[EUR][1000 genomes]
rs3176639	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176748	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4284139	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480232	0.99[EUR][1000 genomes]
rs4617277	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61047578	0.94[EUR][1000 genomes]
rs7031623	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751548	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849509	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952765	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100462400-100472800	Weak transcription	Brain Substantia Nigra	brain
2	chr9:100466800-100472800	Weak transcription	K562	blood
3	chr9:100467200-100472800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:100467200-100476400	Weak transcription	Fetal Intestine Large	intestine
5	chr9:100468000-100472600	Weak transcription	Hela-S3	cervix
6	chr9:100468000-100476600	Weak transcription	GM12878-XiMat	blood
7	chr9:100468600-100472800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:100468600-100473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:100468800-100472800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:100469600-100473000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:100471000-100472800	Enhancers	HepG2	liver
12	chr9:100471200-100476400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:100471400-100472800	Weak transcription	A549	lung
14	chr9:100471400-100473400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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