Variant report

Variant	rs16923815
Chromosome Location	chr9:100480357-100480358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100475762..100478483-chr9:100478575..100480618,2	K562	blood:
2	chr9:100478863..100481337-chr9:100486347..100488581,2	MCF-7	breast:

Extended variants
information (count: 129 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10116536	0.96[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs10119687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10120102	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10123546	0.95[ASN][1000 genomes]
rs10123969	0.93[EUR][1000 genomes]
rs1034099	0.90[CHD][hapmap]
rs1034100	0.90[CHD][hapmap]
rs10512254	0.81[ASN][1000 genomes]
rs10983405	0.93[EUR][1000 genomes]
rs10983424	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983428	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344605	1.00[CEU][hapmap]
rs12346336	0.98[EUR][1000 genomes]
rs12347253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12349178	0.98[EUR][1000 genomes]
rs12350221	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350946	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411344	0.90[CHD][hapmap]
rs16923112	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs16923269	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16923677	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16923719	0.93[EUR][1000 genomes]
rs17335265	0.96[CEU][hapmap];0.95[TSI][hapmap]
rs2282066	0.89[CHD][hapmap]
rs2282067	0.90[CHD][hapmap]
rs2297155	0.81[ASN][1000 genomes]
rs2297157	0.81[ASN][1000 genomes]
rs2297160	0.81[ASN][1000 genomes]
rs2401635	0.81[ASN][1000 genomes]
rs2668794	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2668795	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2668797	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2808681	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs28376250	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403589	0.90[CHD][hapmap]
rs3176623	0.81[ASN][1000 genomes]
rs3176624	0.81[ASN][1000 genomes]
rs3176626	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176628	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176629	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176634	0.90[CHD][hapmap]
rs3176637	0.81[ASN][1000 genomes]
rs3176638	0.81[ASN][1000 genomes]
rs3176639	1.00[CEU][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs3176642	0.81[ASN][1000 genomes]
rs3176644	0.81[ASN][1000 genomes]
rs3176645	0.81[ASN][1000 genomes]
rs3176651	0.81[ASN][1000 genomes]
rs3176654	0.81[ASN][1000 genomes]
rs3176659	0.81[ASN][1000 genomes]
rs3176665	0.81[ASN][1000 genomes]
rs3176668	0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176669	0.81[ASN][1000 genomes]
rs3176670	0.81[ASN][1000 genomes]
rs3176673	0.81[ASN][1000 genomes]
rs3176675	0.81[ASN][1000 genomes]
rs3176682	0.81[ASN][1000 genomes]
rs3176685	0.81[ASN][1000 genomes]
rs3176688	0.81[ASN][1000 genomes]
rs3176694	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176698	0.81[ASN][1000 genomes]
rs3176700	0.81[ASN][1000 genomes]
rs3176703	0.81[ASN][1000 genomes]
rs3176708	0.81[ASN][1000 genomes]
rs3176714	0.81[ASN][1000 genomes]
rs3176720	0.81[ASN][1000 genomes]
rs3176721	0.81[ASN][1000 genomes]
rs3176723	0.81[ASN][1000 genomes]
rs3176724	0.81[ASN][1000 genomes]
rs3176726	0.81[ASN][1000 genomes]
rs3176728	0.81[ASN][1000 genomes]
rs3176734	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176735	0.81[ASN][1000 genomes]
rs3176736	0.81[ASN][1000 genomes]
rs3176739	0.81[ASN][1000 genomes]
rs3176740	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176744	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176746	0.81[ASN][1000 genomes]
rs3176747	0.81[ASN][1000 genomes]
rs3176748	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3176751	0.81[ASN][1000 genomes]
rs3176752	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs3176758	0.81[ASN][1000 genomes]
rs3176759	0.81[ASN][1000 genomes]
rs3750370	0.89[CHD][hapmap]
rs3763606	0.90[CHD][hapmap]
rs3802472	0.90[CHD][hapmap]
rs3802473	0.90[CHD][hapmap]
rs4284139	1.00[CEU][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs4480232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4617277	0.93[EUR][1000 genomes]
rs56052819	0.81[ASN][1000 genomes]
rs56200116	0.81[ASN][1000 genomes]
rs57598118	0.81[ASN][1000 genomes]
rs57612395	0.92[ASN][1000 genomes]
rs57940370	0.81[ASN][1000 genomes]
rs59205756	0.81[ASN][1000 genomes]
rs59354722	0.81[ASN][1000 genomes]
rs59775587	0.81[ASN][1000 genomes]
rs60463150	0.81[ASN][1000 genomes]
rs60821994	0.81[ASN][1000 genomes]
rs61047578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61208411	0.81[ASN][1000 genomes]
rs61440789	0.81[ASN][1000 genomes]
rs7025403	0.90[CHD][hapmap]
rs7031623	1.00[CEU][hapmap]
rs7045160	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs72751548	0.91[EUR][1000 genomes]
rs7341850	0.90[CHD][hapmap]
rs73498377	0.81[ASN][1000 genomes]
rs73498380	0.81[ASN][1000 genomes]
rs73498381	0.81[ASN][1000 genomes]
rs73498394	0.81[ASN][1000 genomes]
rs73500325	0.81[ASN][1000 genomes]
rs73500326	0.81[ASN][1000 genomes]
rs73500328	0.81[ASN][1000 genomes]
rs73500393	0.81[ASN][1000 genomes]
rs73500395	0.81[ASN][1000 genomes]
rs73500396	0.81[ASN][1000 genomes]
rs73500397	0.81[ASN][1000 genomes]
rs73500398	0.81[ASN][1000 genomes]
rs73500400	0.81[ASN][1000 genomes]
rs73502204	0.81[ASN][1000 genomes]
rs7849509	0.99[EUR][1000 genomes]
rs7862356	0.81[ASN][1000 genomes]
rs952765	0.96[CEU][hapmap]
rs953198	0.90[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16923815	TMOD1	cis	lymphoblastoid	seeQTL
rs16923815	FBP1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100480000-100480400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links