Variant report

Variant	rs4480232
Chromosome Location	chr9:100471832-100471833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100470983..100474278-chr9:100563427..100567562,3	MCF-7	breast:
2	chr9:100468636..100471244-chr9:100471475..100473548,2	MCF-7	breast:
3	chr9:100461347..100463609-chr9:100470360..100473150,2	MCF-7	breast:
4	chr9:100471544..100473232-chr9:100656611..100658428,2	K562	blood:
5	chr9:100469221..100472408-chr9:100472563..100475555,3	K562	blood:
6	chr9:100471666..100473790-chr9:100684234..100685883,3	MCF-7	breast:
7	chr9:100466290..100468242-chr9:100471348..100474178,4	K562	blood:
8	chr9:100471241..100474154-chr9:100481493..100483041,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000266608	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10116536	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10119687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120102	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10123546	0.92[ASN][1000 genomes]
rs10123969	0.99[EUR][1000 genomes]
rs10512254	0.84[ASN][1000 genomes]
rs10983405	0.99[EUR][1000 genomes]
rs10983424	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10983428	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12344605	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12346336	0.94[EUR][1000 genomes]
rs12347253	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12349178	0.96[EUR][1000 genomes]
rs12350221	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12350946	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16923112	0.84[ASN][1000 genomes]
rs16923269	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16923677	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16923719	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs16923815	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17335265	0.96[CEU][hapmap]
rs2297155	0.84[ASN][1000 genomes]
rs2297156	0.82[ASN][1000 genomes]
rs2297157	0.84[ASN][1000 genomes]
rs2297158	0.82[ASN][1000 genomes]
rs2297159	0.82[ASN][1000 genomes]
rs2297160	0.84[ASN][1000 genomes]
rs2401635	0.84[ASN][1000 genomes]
rs2668794	0.90[CHB][hapmap]
rs2668795	0.90[CHB][hapmap]
rs2668797	0.90[CHB][hapmap]
rs2808681	0.90[CHB][hapmap]
rs28376250	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3176623	0.84[ASN][1000 genomes]
rs3176624	0.84[ASN][1000 genomes]
rs3176626	0.84[ASN][1000 genomes]
rs3176628	0.84[ASN][1000 genomes]
rs3176629	0.84[ASN][1000 genomes]
rs3176637	0.84[ASN][1000 genomes]
rs3176638	0.84[ASN][1000 genomes]
rs3176639	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs3176642	0.84[ASN][1000 genomes]
rs3176644	0.84[ASN][1000 genomes]
rs3176645	0.84[ASN][1000 genomes]
rs3176651	0.84[ASN][1000 genomes]
rs3176654	0.84[ASN][1000 genomes]
rs3176659	0.84[ASN][1000 genomes]
rs3176665	0.84[ASN][1000 genomes]
rs3176668	0.84[ASN][1000 genomes]
rs3176669	0.84[ASN][1000 genomes]
rs3176670	0.84[ASN][1000 genomes]
rs3176673	0.84[ASN][1000 genomes]
rs3176675	0.84[ASN][1000 genomes]
rs3176682	0.84[ASN][1000 genomes]
rs3176685	0.84[ASN][1000 genomes]
rs3176688	0.84[ASN][1000 genomes]
rs3176694	0.84[ASN][1000 genomes]
rs3176698	0.84[ASN][1000 genomes]
rs3176700	0.84[ASN][1000 genomes]
rs3176703	0.84[ASN][1000 genomes]
rs3176708	0.84[ASN][1000 genomes]
rs3176714	0.84[ASN][1000 genomes]
rs3176720	0.84[ASN][1000 genomes]
rs3176721	0.84[ASN][1000 genomes]
rs3176723	0.84[ASN][1000 genomes]
rs3176724	0.84[ASN][1000 genomes]
rs3176726	0.84[ASN][1000 genomes]
rs3176728	0.84[ASN][1000 genomes]
rs3176734	0.84[ASN][1000 genomes]
rs3176735	0.84[ASN][1000 genomes]
rs3176736	0.84[ASN][1000 genomes]
rs3176739	0.84[ASN][1000 genomes]
rs3176740	0.84[ASN][1000 genomes]
rs3176744	0.84[ASN][1000 genomes]
rs3176746	0.84[ASN][1000 genomes]
rs3176747	0.84[ASN][1000 genomes]
rs3176748	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs3176751	0.84[ASN][1000 genomes]
rs3176752	0.84[ASN][1000 genomes]
rs3176758	0.84[ASN][1000 genomes]
rs3176759	0.84[ASN][1000 genomes]
rs4284139	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4617277	0.99[EUR][1000 genomes]
rs56052819	0.84[ASN][1000 genomes]
rs56200116	0.84[ASN][1000 genomes]
rs57598118	0.84[ASN][1000 genomes]
rs57612395	0.88[ASN][1000 genomes]
rs57940370	0.84[ASN][1000 genomes]
rs59205756	0.84[ASN][1000 genomes]
rs59354722	0.84[ASN][1000 genomes]
rs59775587	0.84[ASN][1000 genomes]
rs60463150	0.84[ASN][1000 genomes]
rs60821994	0.84[ASN][1000 genomes]
rs61047578	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61208411	0.84[ASN][1000 genomes]
rs61440789	0.84[ASN][1000 genomes]
rs7031623	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7045160	0.84[ASN][1000 genomes]
rs72751548	0.97[EUR][1000 genomes]
rs73498377	0.84[ASN][1000 genomes]
rs73498380	0.84[ASN][1000 genomes]
rs73498381	0.84[ASN][1000 genomes]
rs73498394	0.84[ASN][1000 genomes]
rs73500325	0.84[ASN][1000 genomes]
rs73500326	0.84[ASN][1000 genomes]
rs73500328	0.84[ASN][1000 genomes]
rs73500393	0.84[ASN][1000 genomes]
rs73500395	0.84[ASN][1000 genomes]
rs73500396	0.84[ASN][1000 genomes]
rs73500397	0.84[ASN][1000 genomes]
rs73500398	0.84[ASN][1000 genomes]
rs73500400	0.84[ASN][1000 genomes]
rs73502204	0.84[ASN][1000 genomes]
rs7849509	0.95[EUR][1000 genomes]
rs7850986	0.82[ASN][1000 genomes]
rs7862356	0.84[ASN][1000 genomes]
rs952765	0.96[CEU][hapmap]
rs953198	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100462400-100472800	Weak transcription	Brain Substantia Nigra	brain
2	chr9:100466800-100472800	Weak transcription	K562	blood
3	chr9:100467200-100472800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:100467200-100476400	Weak transcription	Fetal Intestine Large	intestine
5	chr9:100468000-100472600	Weak transcription	Hela-S3	cervix
6	chr9:100468000-100476600	Weak transcription	GM12878-XiMat	blood
7	chr9:100468600-100472800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:100468600-100473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:100468800-100472800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:100469600-100473000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:100471000-100472800	Enhancers	HepG2	liver
12	chr9:100471200-100476400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:100471400-100472800	Weak transcription	A549	lung
14	chr9:100471400-100473400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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