Variant report

Variant	rs73502204
Chromosome Location	chr9:100463582-100463583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100457791..100462084-chr9:100462112..100466505,5	K562	blood:
2	chr9:100462976..100466831-chr9:100467484..100471759,4	K562	blood:

Variant related genes	Relation type
ENSG00000214417	Chromatin interaction
ENSG00000136936	Chromatin interaction

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs10119687	0.84[ASN][1000 genomes]
rs10123546	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1034098	0.83[ASN][1000 genomes]
rs1034099	0.83[ASN][1000 genomes]
rs10512254	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10983424	0.81[ASN][1000 genomes]
rs10983428	0.81[ASN][1000 genomes]
rs1116208	0.83[ASN][1000 genomes]
rs1126122	0.87[ASN][1000 genomes]
rs12350221	0.81[ASN][1000 genomes]
rs12350946	0.81[ASN][1000 genomes]
rs14066	0.83[ASN][1000 genomes]
rs1411344	0.83[ASN][1000 genomes]
rs1543636	0.87[ASN][1000 genomes]
rs16922319	0.82[ASN][1000 genomes]
rs16923041	0.87[ASN][1000 genomes]
rs16923112	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16923269	0.97[ASN][1000 genomes]
rs16923677	0.84[ASN][1000 genomes]
rs16923815	0.81[ASN][1000 genomes]
rs1928641	0.83[ASN][1000 genomes]
rs1928642	0.83[ASN][1000 genomes]
rs2282066	0.83[ASN][1000 genomes]
rs2282067	0.87[ASN][1000 genomes]
rs2297155	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297156	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297157	1.00[ASN][1000 genomes]
rs2297158	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297159	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297160	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297161	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2401598	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2401635	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28376250	0.81[ASN][1000 genomes]
rs28403588	0.87[ASN][1000 genomes]
rs28403589	0.87[ASN][1000 genomes]
rs3176623	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176624	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176626	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176628	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176629	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176634	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3176637	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176638	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176642	1.00[ASN][1000 genomes]
rs3176644	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176645	1.00[ASN][1000 genomes]
rs3176651	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176654	1.00[ASN][1000 genomes]
rs3176659	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176665	1.00[ASN][1000 genomes]
rs3176668	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176669	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176670	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176673	1.00[ASN][1000 genomes]
rs3176675	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176682	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176685	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176688	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176694	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176698	1.00[ASN][1000 genomes]
rs3176700	1.00[ASN][1000 genomes]
rs3176703	1.00[ASN][1000 genomes]
rs3176708	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176714	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176720	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176721	1.00[ASN][1000 genomes]
rs3176723	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176724	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176726	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176728	1.00[ASN][1000 genomes]
rs3176734	1.00[ASN][1000 genomes]
rs3176735	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176736	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176739	1.00[ASN][1000 genomes]
rs3176740	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176744	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176745	1.00[EUR][1000 genomes]
rs3176746	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176747	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176751	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176752	1.00[ASN][1000 genomes]
rs3176758	1.00[ASN][1000 genomes]
rs3176759	1.00[ASN][1000 genomes]
rs3750368	0.83[ASN][1000 genomes]
rs3750369	0.83[ASN][1000 genomes]
rs3750370	0.83[ASN][1000 genomes]
rs3763606	0.87[ASN][1000 genomes]
rs3802472	0.83[ASN][1000 genomes]
rs3802473	0.83[ASN][1000 genomes]
rs3802474	0.87[ASN][1000 genomes]
rs3824494	0.83[ASN][1000 genomes]
rs3897841	0.82[ASN][1000 genomes]
rs41274252	0.83[ASN][1000 genomes]
rs4480232	0.84[ASN][1000 genomes]
rs55966848	0.87[ASN][1000 genomes]
rs56052819	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56060429	0.87[ASN][1000 genomes]
rs56164437	0.82[ASN][1000 genomes]
rs56200116	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57188235	0.87[ASN][1000 genomes]
rs57598118	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57940370	1.00[ASN][1000 genomes]
rs58146508	0.87[ASN][1000 genomes]
rs58387091	0.83[ASN][1000 genomes]
rs58390229	0.81[ASN][1000 genomes]
rs58637778	0.83[ASN][1000 genomes]
rs58878935	0.87[ASN][1000 genomes]
rs58933803	0.83[ASN][1000 genomes]
rs59205756	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59354722	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59478543	0.83[ASN][1000 genomes]
rs59662386	0.87[ASN][1000 genomes]
rs59775587	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59791764	0.87[ASN][1000 genomes]
rs59992945	0.83[ASN][1000 genomes]
rs60026475	0.87[ASN][1000 genomes]
rs60028882	0.83[ASN][1000 genomes]
rs60055057	0.87[ASN][1000 genomes]
rs60359353	0.87[ASN][1000 genomes]
rs60463150	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60596698	0.83[ASN][1000 genomes]
rs60653177	0.83[ASN][1000 genomes]
rs60821994	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61047578	0.81[ASN][1000 genomes]
rs61152667	0.83[ASN][1000 genomes]
rs61208411	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61221847	0.87[ASN][1000 genomes]
rs61276200	0.87[ASN][1000 genomes]
rs61440789	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61445476	0.87[ASN][1000 genomes]
rs6478304	0.83[ASN][1000 genomes]
rs7018546	0.87[ASN][1000 genomes]
rs7025403	0.83[ASN][1000 genomes]
rs7033255	1.00[EUR][1000 genomes]
rs7036604	0.83[ASN][1000 genomes]
rs7045160	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7049183	0.87[ASN][1000 genomes]
rs7341850	0.87[ASN][1000 genomes]
rs73498324	0.87[ASN][1000 genomes]
rs73498332	0.87[ASN][1000 genomes]
rs73498338	0.87[ASN][1000 genomes]
rs73498347	0.87[ASN][1000 genomes]
rs73498348	0.87[ASN][1000 genomes]
rs73498355	0.87[ASN][1000 genomes]
rs73498358	0.87[ASN][1000 genomes]
rs73498362	0.87[ASN][1000 genomes]
rs73498377	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498380	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498381	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498394	1.00[ASN][1000 genomes]
rs73500325	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500326	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500328	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500393	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500395	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500396	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500397	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500398	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500400	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500402	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73552509	0.83[ASN][1000 genomes]
rs73552512	0.83[ASN][1000 genomes]
rs73552520	0.83[ASN][1000 genomes]
rs73554629	0.83[ASN][1000 genomes]
rs73554631	0.83[ASN][1000 genomes]
rs73554641	0.83[ASN][1000 genomes]
rs73554646	0.83[ASN][1000 genomes]
rs73554652	0.83[ASN][1000 genomes]
rs7850986	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7856316	0.83[ASN][1000 genomes]
rs7859684	0.83[ASN][1000 genomes]
rs7862356	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7866961	0.87[ASN][1000 genomes]
rs7867046	0.83[ASN][1000 genomes]
rs7869683	0.87[ASN][1000 genomes]
rs9539	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972792	chr9:100460351-100466365	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100459800-100466400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:100460000-100465400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:100460200-100465400	Weak transcription	HSMM	muscle
4	chr9:100460400-100465000	Weak transcription	Fetal Intestine Small	intestine
5	chr9:100460400-100465200	Weak transcription	Liver	Liver
6	chr9:100460400-100465200	Weak transcription	Hela-S3	cervix
7	chr9:100460400-100465400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:100460400-100465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:100460400-100465400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:100460400-100465400	Weak transcription	HSMMtube	muscle
11	chr9:100460400-100465600	Weak transcription	Pancreas	Pancrea
12	chr9:100460400-100465600	Weak transcription	HUVEC	blood vessel
13	chr9:100460400-100465800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:100460400-100465800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:100460400-100465800	Weak transcription	Stomach Mucosa	stomach
16	chr9:100460400-100467000	Weak transcription	Esophagus	oesophagus
17	chr9:100460400-100467800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:100460600-100465000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:100460600-100465200	Weak transcription	Fetal Kidney	kidney
20	chr9:100460600-100465200	Weak transcription	A549	lung
21	chr9:100461400-100467800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:100461600-100465400	Weak transcription	HMEC	breast
23	chr9:100461600-100467200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr9:100462200-100466000	Weak transcription	K562	blood
25	chr9:100462400-100465200	Weak transcription	GM12878-XiMat	blood
26	chr9:100462400-100472800	Weak transcription	Brain Substantia Nigra	brain
27	chr9:100463200-100464200	Enhancers	HepG2	liver
28	chr9:100463400-100463600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr9:100463400-100463600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:100463400-100463800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr9:100463400-100464000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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