Variant report

Variant	rs7850986
Chromosome Location	chr9:100454536-100454537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100453377..100456368-chr9:100458057..100460182,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136936	Chromatin interaction

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs10119687	0.82[ASN][1000 genomes]
rs10123546	0.80[ASN][1000 genomes]
rs1034098	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1034099	0.82[ASN][1000 genomes]
rs10512254	0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1116208	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1126122	0.85[ASN][1000 genomes]
rs14066	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1411344	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1543636	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16922319	0.80[ASN][1000 genomes]
rs16923033	0.81[AFR][1000 genomes]
rs16923041	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16923112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16923269	0.95[ASN][1000 genomes]
rs16923677	0.82[ASN][1000 genomes]
rs1813875	0.81[AFR][1000 genomes]
rs1928641	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1928642	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2282066	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2282067	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2297155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2297157	0.98[ASN][1000 genomes]
rs2297158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2297159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2297160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297161	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2401598	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2401635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28403588	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28403589	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3176623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3176635	0.86[AFR][1000 genomes]
rs3176637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176642	0.98[ASN][1000 genomes]
rs3176644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176645	0.98[ASN][1000 genomes]
rs3176651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176654	0.98[ASN][1000 genomes]
rs3176657	0.83[AFR][1000 genomes]
rs3176659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176665	0.98[ASN][1000 genomes]
rs3176668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176673	0.98[ASN][1000 genomes]
rs3176675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176687	0.86[AFR][1000 genomes]
rs3176688	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176698	0.98[ASN][1000 genomes]
rs3176700	0.98[ASN][1000 genomes]
rs3176703	0.98[ASN][1000 genomes]
rs3176706	0.86[AFR][1000 genomes]
rs3176708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176711	0.86[AFR][1000 genomes]
rs3176712	0.86[AFR][1000 genomes]
rs3176714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176721	0.98[ASN][1000 genomes]
rs3176723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176728	0.98[ASN][1000 genomes]
rs3176734	0.98[ASN][1000 genomes]
rs3176735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176739	0.98[ASN][1000 genomes]
rs3176740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176751	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3176752	0.98[ASN][1000 genomes]
rs3176758	0.98[ASN][1000 genomes]
rs3176759	0.98[ASN][1000 genomes]
rs3750368	0.82[ASN][1000 genomes]
rs3750369	0.82[ASN][1000 genomes]
rs3750370	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3763606	0.85[ASN][1000 genomes]
rs3802472	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3802473	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3802474	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3824494	0.82[ASN][1000 genomes]
rs3897841	0.80[ASN][1000 genomes]
rs41274252	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4480232	0.82[ASN][1000 genomes]
rs55966848	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56052819	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56060429	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56164437	0.80[ASN][1000 genomes]
rs56200116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57188235	0.85[ASN][1000 genomes]
rs57598118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57940370	0.98[ASN][1000 genomes]
rs58146508	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58387091	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58390229	0.87[AFR][1000 genomes]
rs58637778	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58878935	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58933803	0.82[ASN][1000 genomes]
rs59205756	0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59354722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59478543	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59662386	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs59775587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59791764	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs59992945	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60026475	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60028882	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60055057	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60359353	0.85[ASN][1000 genomes]
rs60463150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60596698	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60653177	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60821994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61152667	0.82[ASN][1000 genomes]
rs61208411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61221847	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61276200	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61440789	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61445476	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6478304	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7018546	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7021377	0.86[AFR][1000 genomes]
rs7025403	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7036604	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7045160	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7049183	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7341850	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498324	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498329	0.81[AFR][1000 genomes]
rs73498332	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498338	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498347	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498348	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498355	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498358	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498359	0.81[AFR][1000 genomes]
rs73498362	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73498365	0.86[AFR][1000 genomes]
rs73498377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73498380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73498381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73498394	0.98[ASN][1000 genomes]
rs73500307	0.86[AFR][1000 genomes]
rs73500321	0.86[AFR][1000 genomes]
rs73500325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500326	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500392	0.84[AFR][1000 genomes]
rs73500393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73500400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73502204	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73502208	0.82[AFR][1000 genomes]
rs73502210	0.82[AFR][1000 genomes]
rs73552509	0.82[ASN][1000 genomes]
rs73552512	0.82[ASN][1000 genomes]
rs73552520	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73554629	0.82[ASN][1000 genomes]
rs73554631	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73554641	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73554646	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73554652	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7853179	0.89[AFR][1000 genomes]
rs7856316	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7859684	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7862356	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7866961	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7867046	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7869683	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9539	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100401200-100456000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:100402400-100455600	Strong transcription	Dnd41	blood
3	chr9:100402600-100456000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:100402600-100456200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr9:100402800-100456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:100403000-100454600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:100403200-100455000	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr9:100404800-100455400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:100423000-100456000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:100429200-100455000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:100429200-100455600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:100429600-100455400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:100429600-100455800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr9:100429800-100456000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:100434400-100455600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:100436600-100454600	Strong transcription	Adipose Nuclei	Adipose
17	chr9:100437400-100456000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:100437600-100455800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:100437600-100458400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:100438000-100458400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:100438400-100457200	Weak transcription	Psoas Muscle	Psoas
22	chr9:100438400-100457400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:100438600-100457800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr9:100439000-100458800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:100442000-100455200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr9:100445000-100455000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:100446800-100456800	Weak transcription	Small Intestine	intestine
28	chr9:100446800-100457600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr9:100446800-100457800	Weak transcription	Aorta	Aorta
30	chr9:100447000-100457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:100447200-100456400	Weak transcription	K562	blood
32	chr9:100447200-100457200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:100447200-100457400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:100447200-100458400	Weak transcription	Colonic Mucosa	Colon
35	chr9:100448600-100454600	Strong transcription	Fetal Stomach	stomach
36	chr9:100448600-100455800	Strong transcription	Fetal Brain Female	brain
37	chr9:100448600-100455800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:100449800-100454600	Strong transcription	Spleen	Spleen
39	chr9:100450200-100457000	Weak transcription	HMEC	breast
40	chr9:100451200-100456400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr9:100451200-100458400	Weak transcription	Esophagus	oesophagus
42	chr9:100451400-100455600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:100451600-100456200	Weak transcription	Brain Angular Gyrus	brain
44	chr9:100451600-100456800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:100451600-100458000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:100452000-100457800	Weak transcription	Stomach Mucosa	stomach
47	chr9:100452200-100454800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr9:100452200-100455600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:100452400-100454600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr9:100452400-100455200	Strong transcription	Liver	Liver

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