Variant report

Variant	rs3176629
Chromosome Location	chr9:100460075-100460076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:100458110-100460285	MCF10A-Er-Src	breast:	n/a	n/a
2	NFIC	chr9:100459889-100460696	ECC-1	luminal epithelium:	n/a	chr9:100460328-100460345
3	WRNIP1	chr9:100459750-100460302	GM12878	blood:	n/a	n/a
4	GATA2	chr9:100459646-100460094	HUVEC	blood vessel:	n/a	n/a
5	TBP	chr9:100459334-100460093	GM12878	blood:	n/a	n/a
6	MAZ	chr9:100458852-100460181	GM12878	blood:	n/a	n/a
7	MYC	chr9:100458449-100460078	K562	blood:	n/a	n/a
8	ARID3A	chr9:100459519-100460282	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:100459147-100460335	HepG2	liver:	n/a	n/a
10	GATA3	chr9:100459064-100460139	MCF-7	breast:	n/a	n/a
11	MXI1	chr9:100457686-100460675	SK-N-SH	brain:	n/a	n/a
12	HA-E2F1	chr9:100459378-100460094	MCF-7	breast:	n/a	chr9:100459695-100459704
13	GATA3	chr9:100459189-100460121	MCF-7	breast:	n/a	n/a
14	NR2F2	chr9:100459358-100460147	K562	blood:	n/a	n/a
15	MAX	chr9:100458909-100460086	HepG2	liver:	n/a	n/a
16	TBP	chr9:100459412-100460107	Hela-S3	cervix:	n/a	n/a
17	MTA3	chr9:100458996-100460082	GM12878	blood:	n/a	n/a
18	POLR2A	chr9:100458957-100460102	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr9:100458970-100460182	GM12878	blood:	n/a	n/a
20	NFIC	chr9:100459416-100460145	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:100458868-100460251	Raji	blood:	n/a	n/a
22	GATA3	chr9:100459011-100460118	A549	lung:	n/a	n/a
23	TEAD4	chr9:100459374-100460127	K562	blood:	n/a	n/a
24	SMC3	chr9:100459978-100460178	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:100458790-100460169	SK-N-MC	brain:	n/a	n/a
26	RFX5	chr9:100459308-100460154	HepG2	liver:	n/a	n/a
27	RCOR1	chr9:100458914-100460295	Hela-S3	cervix:	n/a	n/a
28	GATA3	chr9:100459691-100460214	SH-SY5Y	brain:	n/a	n/a
29	NR2F2	chr9:100459032-100460119	MCF-7	breast:	n/a	n/a
30	RCOR1	chr9:100458876-100460086	GM12878	blood:	n/a	n/a
31	POLR2A	chr9:100458799-100460120	GM12891	blood:	n/a	n/a
32	REST	chr9:100458652-100460125	H1-neurons	neurons:	n/a	chr9:100459603-100459613 chr9:100459729-100459739
33	MAX	chr9:100458936-100460116	A549	lung:	n/a	n/a
34	POLR2A	chr9:100459189-100460105	U87	brain:	n/a	n/a
35	POLR2A	chr9:100459071-100460108	HepG2	liver:	n/a	n/a
36	BHLHE40	chr9:100459081-100460118	GM12878	blood:	n/a	n/a
37	MYC	chr9:100458442-100460131	NB4	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100457791..100462084-chr9:100462112..100466505,5	K562	blood:
2	chr9:100393846..100397319-chr9:100457855..100461087,4	MCF-7	breast:
3	chr9:100393858..100397326-chr9:100457081..100460285,5	MCF-7	breast:
4	chr9:100458946..100460891-chr9:100746178..100747740,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266608	TF binding region
XPA	TF binding region
KRT18P13	TF binding region
ENSG00000136938	Chromatin interaction
ENSG00000136925	Chromatin interaction
ENSG00000266608	Chromatin interaction
ENSG00000136937	Chromatin interaction

Extended variants
information (count: 203 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs10119687	0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs10123546	0.82[ASN][1000 genomes]
rs1034098	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1034099	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs1034100	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs10512254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10983424	0.81[ASN][1000 genomes]
rs10983428	0.81[ASN][1000 genomes]
rs1116208	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1126122	0.87[ASN][1000 genomes]
rs12350221	0.81[ASN][1000 genomes]
rs12350946	0.81[ASN][1000 genomes]
rs14066	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1411344	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1543636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16922319	0.82[ASN][1000 genomes]
rs16923033	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs16923041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16923112	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16923269	1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[ASN][1000 genomes]
rs16923677	0.84[ASN][1000 genomes]
rs16923815	0.81[ASN][1000 genomes]
rs1813875	0.81[AFR][1000 genomes]
rs1928641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1928642	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2282066	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2282067	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2297155	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297156	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2297158	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297159	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297161	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2401598	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2401635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2668794	0.82[JPT][hapmap]
rs2668795	0.82[JPT][hapmap]
rs2668797	0.82[JPT][hapmap]
rs2805783	0.82[JPT][hapmap]
rs2808681	0.82[JPT][hapmap]
rs28376250	0.81[ASN][1000 genomes]
rs28403588	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28403589	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3176623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176626	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176628	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176634	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3176635	0.86[AFR][1000 genomes]
rs3176637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176642	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176645	1.00[ASN][1000 genomes]
rs3176651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176654	1.00[ASN][1000 genomes]
rs3176657	0.83[AFR][1000 genomes]
rs3176659	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176665	1.00[ASN][1000 genomes]
rs3176668	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176673	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176685	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176687	0.86[AFR][1000 genomes]
rs3176688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176694	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176698	1.00[ASN][1000 genomes]
rs3176700	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176706	0.86[AFR][1000 genomes]
rs3176708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176711	0.86[AFR][1000 genomes]
rs3176712	0.86[AFR][1000 genomes]
rs3176714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176734	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs3176735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176739	1.00[ASN][1000 genomes]
rs3176740	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176744	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176752	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs3176758	1.00[ASN][1000 genomes]
rs3176759	1.00[ASN][1000 genomes]
rs3750368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3750369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3750370	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3763606	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs3802472	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3802473	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3802474	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3824494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3897841	0.82[ASN][1000 genomes]
rs41274252	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4480232	0.84[ASN][1000 genomes]
rs55966848	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56052819	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56060429	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56164437	0.82[ASN][1000 genomes]
rs56200116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57188235	0.87[ASN][1000 genomes]
rs57598118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57940370	1.00[ASN][1000 genomes]
rs58146508	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58387091	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58390229	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs58637778	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58878935	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58933803	0.83[ASN][1000 genomes]
rs59205756	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59354722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59478543	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59662386	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59775587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59791764	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59992945	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60026475	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60028882	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60055057	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60359353	0.87[ASN][1000 genomes]
rs60463150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60596698	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60653177	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60821994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61047578	0.81[ASN][1000 genomes]
rs61152667	0.83[ASN][1000 genomes]
rs61208411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61221847	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61276200	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61440789	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61445476	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6478304	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7018546	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7021377	0.86[AFR][1000 genomes]
rs7025403	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7036604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7045160	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7049183	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7341850	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498324	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498329	0.81[AFR][1000 genomes]
rs73498332	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498338	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498347	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498348	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498355	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498358	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498359	0.81[AFR][1000 genomes]
rs73498362	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498365	0.86[AFR][1000 genomes]
rs73498377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498394	1.00[ASN][1000 genomes]
rs73500307	0.86[AFR][1000 genomes]
rs73500321	0.86[AFR][1000 genomes]
rs73500325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500326	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500392	0.84[AFR][1000 genomes]
rs73500393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73502204	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73502208	0.82[AFR][1000 genomes]
rs73502210	0.82[AFR][1000 genomes]
rs73552509	0.83[ASN][1000 genomes]
rs73552512	0.83[ASN][1000 genomes]
rs73552520	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554629	0.83[ASN][1000 genomes]
rs73554631	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554641	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554646	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554652	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7850986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7853179	0.81[ASW][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7856316	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7857174	0.93[ASW][hapmap];0.87[GIH][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap]
rs7859684	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7859979	0.93[ASW][hapmap];0.87[GIH][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap]
rs7862356	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7866961	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7867046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7869683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs953198	0.82[JPT][hapmap]
rs9539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3176629	TSTD2	cis	lymphoblastoid	seeQTL
rs3176629	XPA	cis	lymphoblastoid	seeQTL
rs3176629	TMOD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100458400-100460200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:100458400-100460200	Active TSS	Psoas Muscle	Psoas
3	chr9:100458400-100460400	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr9:100458600-100460200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr9:100458800-100460400	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr9:100459600-100460200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr9:100459600-100460200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:100459600-100460400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:100459800-100460200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:100459800-100460200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:100459800-100460200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:100459800-100460200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:100459800-100460200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
14	chr9:100459800-100460200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr9:100459800-100460200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:100459800-100460200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr9:100459800-100460200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr9:100459800-100460200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr9:100459800-100460200	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr9:100459800-100460200	Flanking Active TSS	Primary B cells from peripheral blood	blood
21	chr9:100459800-100460200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr9:100459800-100460200	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr9:100459800-100460200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:100459800-100460200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr9:100459800-100460200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr9:100459800-100460200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:100459800-100460200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr9:100459800-100460200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:100459800-100460200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:100459800-100460200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr9:100459800-100460200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:100459800-100460200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:100459800-100460200	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr9:100459800-100460200	Flanking Active TSS	Liver	Liver
35	chr9:100459800-100460200	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr9:100459800-100460200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
37	chr9:100459800-100460200	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr9:100459800-100460200	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr9:100459800-100460200	Flanking Active TSS	Fetal Brain Male	brain
40	chr9:100459800-100460200	Flanking Active TSS	Fetal Heart	heart
41	chr9:100459800-100460200	Flanking Active TSS	Fetal Lung	lung
42	chr9:100459800-100460200	Flanking Active TSS	Fetal Thymus	thymus
43	chr9:100459800-100460200	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr9:100459800-100460200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr9:100459800-100460200	Flanking Active TSS	Stomach Mucosa	stomach
46	chr9:100459800-100460200	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr9:100459800-100460200	Flanking Active TSS	Thymus	Thymus
48	chr9:100459800-100460200	Flanking Active TSS	HSMM	muscle
49	chr9:100459800-100460200	Flanking Active TSS	K562	blood
50	chr9:100459800-100460200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Variant report

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