Variant report

Variant	rs3176644
Chromosome Location	chr9:100457430-100457431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:100457118-100457431	IMR90	lung:	n/a	n/a
2	CEBPB	chr9:100456895-100457516	K562	blood:	n/a	n/a
3	CEBPB	chr9:100457087-100457443	Hela-S3	cervix:	n/a	n/a
4	FOS	chr9:100457089-100457454	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr9:100457108-100457447	MCF10A-Er-Src	breast:	n/a	n/a
6	FOXA1	chr9:100457320-100457632	T-47D	breast:	n/a	n/a
7	CEBPB	chr9:100456862-100457449	K562	blood:	n/a	n/a
8	STAT3	chr9:100457266-100457466	MCF10A-Er-Src	breast:	n/a	n/a
9	FOXA1	chr9:100457344-100457564	T-47D	breast:	n/a	n/a
10	FOS	chr9:100457053-100457542	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr9:100457313-100457505	MCF10A-Er-Src	breast:	n/a	n/a
12	FOXA2	chr9:100457268-100457595	A549	lung:	n/a	n/a
13	FOS	chr9:100457114-100457631	MCF10A-Er-Src	breast:	n/a	n/a
14	FOXA1	chr9:100457278-100457587	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100455758..100458745-chr9:100534997..100536831,2	K562	blood:
2	chr9:100393858..100397326-chr9:100457081..100460285,5	MCF-7	breast:
3	chr9:100392082..100395139-chr9:100455935..100459131,3	K562	blood:
4	chr9:100456538..100459527-chr9:100606763..100609012,2	K562	blood:
5	chr9:100456373..100458750-chr9:100743910..100746135,2	K562	blood:

No data

Variant related genes	Relation type
KRT18P13	TF binding region
ENSG00000136938	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000136925	Chromatin interaction

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10119687	0.84[ASN][1000 genomes]
rs10123546	0.82[ASN][1000 genomes]
rs1034098	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1034099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1034100	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10512254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10983424	0.81[ASN][1000 genomes]
rs10983428	0.81[ASN][1000 genomes]
rs1116208	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1126122	0.87[ASN][1000 genomes]
rs12350221	0.81[ASN][1000 genomes]
rs12350946	0.81[ASN][1000 genomes]
rs14066	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1411344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1543636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16922319	0.82[ASN][1000 genomes]
rs16923033	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs16923041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16923112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16923269	1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[ASN][1000 genomes]
rs16923677	0.84[ASN][1000 genomes]
rs16923815	0.81[ASN][1000 genomes]
rs1813875	0.81[AFR][1000 genomes]
rs1928641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1928642	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2282066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2282067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2297155	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297156	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2297158	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297159	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2297160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297161	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2401598	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2401635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2668794	0.82[JPT][hapmap]
rs2668795	0.82[JPT][hapmap]
rs2668797	0.82[JPT][hapmap]
rs2805783	0.82[JPT][hapmap]
rs2808681	0.82[JPT][hapmap]
rs28376250	0.81[ASN][1000 genomes]
rs28403588	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28403589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3176623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176626	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176629	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3176635	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176642	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176645	1.00[ASN][1000 genomes]
rs3176651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176654	1.00[ASN][1000 genomes]
rs3176657	0.83[AFR][1000 genomes]
rs3176659	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176665	1.00[ASN][1000 genomes]
rs3176668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176673	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176685	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176687	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176694	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176698	1.00[ASN][1000 genomes]
rs3176700	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176706	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176711	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176712	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176739	1.00[ASN][1000 genomes]
rs3176740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176744	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3176752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176758	1.00[ASN][1000 genomes]
rs3176759	1.00[ASN][1000 genomes]
rs3750368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3750369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3750370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3763606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3802472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3802473	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3802474	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3824494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3897841	0.82[ASN][1000 genomes]
rs41274252	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4480232	0.84[ASN][1000 genomes]
rs55966848	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56052819	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56060429	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56164437	0.82[ASN][1000 genomes]
rs56200116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57188235	0.87[ASN][1000 genomes]
rs57598118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57940370	1.00[ASN][1000 genomes]
rs58146508	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58387091	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58390229	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs58637778	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58878935	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58933803	0.83[ASN][1000 genomes]
rs59205756	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59354722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59478543	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59662386	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59775587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59791764	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59992945	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60026475	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60028882	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60055057	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60359353	0.87[ASN][1000 genomes]
rs60463150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60596698	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60653177	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60821994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61047578	0.81[ASN][1000 genomes]
rs61152667	0.83[ASN][1000 genomes]
rs61208411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61221847	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61276200	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61440789	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61445476	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6478304	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6478305	0.80[YRI][hapmap]
rs7018546	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7021377	0.86[AFR][1000 genomes]
rs7025403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7036604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7045160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7049183	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7341850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498324	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498329	0.81[AFR][1000 genomes]
rs73498332	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498338	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498347	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498348	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498355	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498358	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498359	0.81[AFR][1000 genomes]
rs73498362	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73498365	0.86[AFR][1000 genomes]
rs73498377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498394	1.00[ASN][1000 genomes]
rs73500307	0.86[AFR][1000 genomes]
rs73500321	0.86[AFR][1000 genomes]
rs73500325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500326	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500392	0.84[AFR][1000 genomes]
rs73500393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73500400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73502204	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73502208	0.82[AFR][1000 genomes]
rs73502210	0.82[AFR][1000 genomes]
rs73552509	0.83[ASN][1000 genomes]
rs73552512	0.83[ASN][1000 genomes]
rs73552520	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554629	0.83[ASN][1000 genomes]
rs73554631	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554641	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554646	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73554652	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7850986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7853179	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7856316	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7859684	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7862356	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7866961	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7867046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7869683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs953198	0.82[JPT][hapmap]
rs9539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100437600-100458400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100438000-100458400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:100438600-100457800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:100439000-100458800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:100446800-100457600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:100446800-100457800	Weak transcription	Aorta	Aorta
7	chr9:100447000-100457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:100447200-100458400	Weak transcription	Colonic Mucosa	Colon
9	chr9:100451200-100458400	Weak transcription	Esophagus	oesophagus
10	chr9:100451600-100458000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:100452000-100457800	Weak transcription	Stomach Mucosa	stomach
12	chr9:100452600-100457800	Weak transcription	Pancreas	Pancrea
13	chr9:100453800-100457800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:100453800-100457800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:100453800-100457800	Weak transcription	NH-A	brain
16	chr9:100453800-100458400	Weak transcription	Left Ventricle	heart
17	chr9:100454000-100457600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:100454000-100457800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:100454000-100457800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:100454000-100458200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:100454000-100458200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:100454000-100458400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr9:100454000-100458400	Weak transcription	Thymus	Thymus
24	chr9:100454200-100457800	Weak transcription	Fetal Thymus	thymus
25	chr9:100454400-100457800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:100454400-100457800	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:100454400-100458200	Weak transcription	Placenta	Placenta
28	chr9:100454400-100458800	Weak transcription	Lung	lung
29	chr9:100454400-100459000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:100454600-100457800	Weak transcription	Spleen	Spleen
31	chr9:100455000-100457800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr9:100455200-100457600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr9:100455400-100457800	Enhancers	Brain Substantia Nigra	brain
34	chr9:100455400-100458200	Enhancers	Liver	Liver
35	chr9:100455600-100458400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr9:100455800-100457600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr9:100455800-100457800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr9:100455800-100458000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:100455800-100458000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:100456000-100457600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:100456000-100457800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:100456000-100457800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr9:100456000-100458000	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr9:100456000-100458200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:100456000-100458200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr9:100456200-100457600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:100456400-100457600	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr9:100456400-100457800	Enhancers	Fetal Brain Male	brain
49	chr9:100456400-100458000	Enhancers	Fetal Heart	heart
50	chr9:100456400-100458000	Enhancers	Osteobl	bone

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