Variant report

Variant	rs14066
Chromosome Location	chr9:100363576-100363577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100229670..100231285-chr9:100361449..100364307,2	MCF-7	breast:
2	chr9:100361131..100364262-chr9:100393910..100395873,3	MCF-7	breast:
3	chr9:100361939..100364990-chr9:100392848..100396083,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136925	Chromatin interaction
ENSG00000196116	Chromatin interaction
ENSG00000136937	Chromatin interaction

Extended variants
information (count: 182 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs10120837	0.82[ASN][1000 genomes]
rs1034098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1034099	1.00[ASN][1000 genomes]
rs10512254	0.83[ASN][1000 genomes]
rs1116208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1126122	0.97[ASN][1000 genomes]
rs12345701	0.93[ASN][1000 genomes]
rs12349801	0.88[ASN][1000 genomes]
rs1411344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1543636	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16922319	0.98[ASN][1000 genomes]
rs16923033	0.82[AFR][1000 genomes]
rs16923041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16923112	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16923269	0.81[ASN][1000 genomes]
rs1813875	0.82[AFR][1000 genomes]
rs1928641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1928642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2282066	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2282067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2297155	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2297156	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2297157	0.83[ASN][1000 genomes]
rs2297158	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2297159	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2297160	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2401635	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28403588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28403589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3176623	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176624	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176626	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176628	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176629	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176634	0.85[AFR][1000 genomes]
rs3176637	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176638	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176642	0.83[ASN][1000 genomes]
rs3176644	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176645	0.83[ASN][1000 genomes]
rs3176651	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176654	0.83[ASN][1000 genomes]
rs3176659	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176665	0.83[ASN][1000 genomes]
rs3176668	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176669	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176670	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176673	0.83[ASN][1000 genomes]
rs3176675	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176682	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176685	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176688	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176694	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176698	0.83[ASN][1000 genomes]
rs3176700	0.83[ASN][1000 genomes]
rs3176703	0.83[ASN][1000 genomes]
rs3176708	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176714	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176720	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176721	0.83[ASN][1000 genomes]
rs3176723	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176724	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176726	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176728	0.83[ASN][1000 genomes]
rs3176734	0.83[ASN][1000 genomes]
rs3176735	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176736	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176739	0.83[ASN][1000 genomes]
rs3176740	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176744	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176746	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176747	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3176751	0.83[ASN][1000 genomes]
rs3176752	0.83[ASN][1000 genomes]
rs3176758	0.83[ASN][1000 genomes]
rs3176759	0.83[ASN][1000 genomes]
rs3750368	1.00[ASN][1000 genomes]
rs3750369	1.00[ASN][1000 genomes]
rs3750370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3763606	0.97[ASN][1000 genomes]
rs3802472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3802473	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3802474	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3824494	1.00[ASN][1000 genomes]
rs3897841	0.98[ASN][1000 genomes]
rs41274252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55966848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56052819	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56060429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56164437	0.98[ASN][1000 genomes]
rs56200116	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57188235	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57598118	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57940370	0.83[ASN][1000 genomes]
rs58146508	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58387091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58390229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58637778	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58878935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58933803	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59205756	0.83[ASN][1000 genomes]
rs59354722	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59478543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59662386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59775587	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59791764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59992945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60026475	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60028882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60055057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60104153	0.88[AMR][1000 genomes]
rs60359353	0.97[ASN][1000 genomes]
rs60463150	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60596698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60653177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60821994	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60822454	0.83[ASN][1000 genomes]
rs61152667	1.00[ASN][1000 genomes]
rs61208411	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61221847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61276200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61440789	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61445476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61739366	0.85[AFR][1000 genomes]
rs6478304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6478305	0.86[AFR][1000 genomes]
rs7018546	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7025403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7036604	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7045160	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7049183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7341850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498323	0.83[AFR][1000 genomes]
rs73498324	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498329	0.81[AFR][1000 genomes]
rs73498332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498347	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498359	0.82[AFR][1000 genomes]
rs73498362	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498377	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73498380	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73498381	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73498394	0.83[ASN][1000 genomes]
rs73500325	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500326	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500328	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500393	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500395	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500396	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500397	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500398	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73500400	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73502204	0.83[ASN][1000 genomes]
rs73551090	0.85[AFR][1000 genomes]
rs73552509	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73552512	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73552520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73554629	1.00[ASN][1000 genomes]
rs73554631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73554641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73554646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73554650	0.86[AFR][1000 genomes]
rs73554652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7850986	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7853179	0.81[AFR][1000 genomes]
rs7856316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7857174	0.86[AFR][1000 genomes]
rs7859684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7859979	0.86[AFR][1000 genomes]
rs7862356	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7866961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7867046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7869683	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9539	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9777684	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100348800-100384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:100357200-100363800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:100360000-100364400	Weak transcription	Fetal Kidney	kidney
4	chr9:100360600-100363600	Weak transcription	NHEK	skin
5	chr9:100361000-100363800	Weak transcription	Colonic Mucosa	Colon
6	chr9:100361000-100364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:100361000-100364400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:100361000-100367200	Weak transcription	Small Intestine	intestine
9	chr9:100361000-100381200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:100361200-100364000	Weak transcription	Fetal Thymus	thymus
11	chr9:100361200-100365400	Weak transcription	Stomach Mucosa	stomach
12	chr9:100361200-100366600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:100361200-100366600	Weak transcription	NH-A	brain
14	chr9:100361200-100368400	Strong transcription	Brain Anterior Caudate	brain
15	chr9:100361400-100364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:100361400-100368600	Strong transcription	Hela-S3	cervix
17	chr9:100361400-100370000	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:100361600-100363800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:100361600-100364400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr9:100361600-100365000	Strong transcription	K562	blood
21	chr9:100361600-100365400	Strong transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:100361600-100366400	Weak transcription	NHDF-Ad	bronchial
23	chr9:100361600-100368400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr9:100361600-100369000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:100361600-100369200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:100361600-100369400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:100361600-100369800	Strong transcription	Dnd41	blood
28	chr9:100361600-100370200	Strong transcription	Brain Hippocampus Middle	brain
29	chr9:100361600-100371000	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr9:100361600-100371200	Strong transcription	Liver	Liver
31	chr9:100361600-100371400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:100361600-100371600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:100361600-100375800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr9:100361800-100364400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:100361800-100364400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:100361800-100365600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr9:100361800-100368400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:100361800-100368400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:100361800-100369000	Strong transcription	Ovary	ovary
40	chr9:100361800-100369200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:100361800-100369400	Strong transcription	Brain Cingulate Gyrus	brain
42	chr9:100361800-100369800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:100361800-100370800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:100361800-100371200	Strong transcription	Placenta	Placenta
45	chr9:100361800-100371200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr9:100361800-100371400	Strong transcription	Primary B cells from cord blood	blood
47	chr9:100361800-100371400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:100361800-100371400	Strong transcription	Fetal Stomach	stomach
49	chr9:100361800-100371400	Strong transcription	Lung	lung
50	chr9:100361800-100374000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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