Variant report

Variant	rs60822454
Chromosome Location	chr9:100343461-100343462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1034098	0.83[ASN][1000 genomes]
rs1034099	0.83[ASN][1000 genomes]
rs1116208	0.83[ASN][1000 genomes]
rs1126122	0.80[ASN][1000 genomes]
rs12345701	0.90[ASN][1000 genomes]
rs12349801	0.95[ASN][1000 genomes]
rs12349848	0.86[ASN][1000 genomes]
rs14066	0.83[ASN][1000 genomes]
rs1411344	0.83[ASN][1000 genomes]
rs1543636	0.80[ASN][1000 genomes]
rs16922319	0.85[ASN][1000 genomes]
rs16923041	0.80[ASN][1000 genomes]
rs1928641	0.83[ASN][1000 genomes]
rs1928642	0.83[ASN][1000 genomes]
rs2149985	0.90[AMR][1000 genomes]
rs2282066	0.83[ASN][1000 genomes]
rs2282067	0.80[ASN][1000 genomes]
rs2297164	0.87[AMR][1000 genomes]
rs28403588	0.80[ASN][1000 genomes]
rs28403589	0.80[ASN][1000 genomes]
rs3750368	0.83[ASN][1000 genomes]
rs3750369	0.83[ASN][1000 genomes]
rs3750370	0.83[ASN][1000 genomes]
rs3763606	0.80[ASN][1000 genomes]
rs3802472	0.83[ASN][1000 genomes]
rs3802473	0.83[ASN][1000 genomes]
rs3802474	0.80[ASN][1000 genomes]
rs3824494	0.83[ASN][1000 genomes]
rs3897841	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs41274252	0.83[ASN][1000 genomes]
rs55966848	0.80[ASN][1000 genomes]
rs56060429	0.80[ASN][1000 genomes]
rs56164437	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57188235	0.80[ASN][1000 genomes]
rs58146508	0.80[ASN][1000 genomes]
rs58387091	0.83[ASN][1000 genomes]
rs58390229	0.87[ASN][1000 genomes]
rs58637778	0.83[ASN][1000 genomes]
rs58878935	0.80[ASN][1000 genomes]
rs58933803	0.83[ASN][1000 genomes]
rs59478543	0.83[ASN][1000 genomes]
rs59662386	0.80[ASN][1000 genomes]
rs59791764	0.80[ASN][1000 genomes]
rs59992945	0.83[ASN][1000 genomes]
rs60026475	0.80[ASN][1000 genomes]
rs60028882	0.83[ASN][1000 genomes]
rs60055057	0.80[ASN][1000 genomes]
rs60359353	0.80[ASN][1000 genomes]
rs60596698	0.83[ASN][1000 genomes]
rs60653177	0.83[ASN][1000 genomes]
rs61152667	0.83[ASN][1000 genomes]
rs61221847	0.80[ASN][1000 genomes]
rs61276200	0.80[ASN][1000 genomes]
rs61445476	0.80[ASN][1000 genomes]
rs6478304	0.83[ASN][1000 genomes]
rs7018546	0.80[ASN][1000 genomes]
rs7025403	0.83[ASN][1000 genomes]
rs7036604	0.83[ASN][1000 genomes]
rs7049183	0.80[ASN][1000 genomes]
rs7341850	0.80[ASN][1000 genomes]
rs73498324	0.80[ASN][1000 genomes]
rs73498332	0.80[ASN][1000 genomes]
rs73498338	0.80[ASN][1000 genomes]
rs73498347	0.80[ASN][1000 genomes]
rs73498348	0.80[ASN][1000 genomes]
rs73498355	0.80[ASN][1000 genomes]
rs73498358	0.80[ASN][1000 genomes]
rs73498362	0.80[ASN][1000 genomes]
rs73552509	0.83[ASN][1000 genomes]
rs73552512	0.83[ASN][1000 genomes]
rs73552520	0.83[ASN][1000 genomes]
rs73554629	0.83[ASN][1000 genomes]
rs73554631	0.83[ASN][1000 genomes]
rs73554641	0.83[ASN][1000 genomes]
rs73554646	0.83[ASN][1000 genomes]
rs73554652	0.83[ASN][1000 genomes]
rs7856316	0.83[ASN][1000 genomes]
rs7859684	0.83[ASN][1000 genomes]
rs7866961	0.80[ASN][1000 genomes]
rs7867046	0.83[ASN][1000 genomes]
rs7869683	0.80[ASN][1000 genomes]
rs9539	0.83[ASN][1000 genomes]
rs9777684	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100327000-100349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:100333600-100361800	Weak transcription	Gastric	stomach
3	chr9:100334200-100356000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:100334400-100356000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:100334400-100356400	Weak transcription	HSMMtube	muscle
6	chr9:100334600-100353600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:100334800-100355600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:100335600-100356600	Weak transcription	Brain Angular Gyrus	brain
9	chr9:100336200-100349200	Weak transcription	K562	blood
10	chr9:100336200-100356200	Weak transcription	Aorta	Aorta
11	chr9:100336200-100360000	Weak transcription	Brain Substantia Nigra	brain
12	chr9:100338200-100356200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:100338200-100356800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:100338400-100353400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:100338400-100356000	Weak transcription	Brain Anterior Caudate	brain
16	chr9:100338400-100361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:100338600-100353200	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:100338600-100360800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:100341200-100358400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:100341600-100353600	Weak transcription	Ovary	ovary
21	chr9:100341600-100356000	Weak transcription	Right Atrium	heart
22	chr9:100342200-100349400	Weak transcription	Left Ventricle	heart
23	chr9:100342200-100353200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:100342400-100353200	Weak transcription	Psoas Muscle	Psoas
25	chr9:100342400-100353400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:100342400-100353600	Weak transcription	Fetal Heart	heart
27	chr9:100342400-100355800	Weak transcription	Right Ventricle	heart

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