The 2.0 version of rSNPBase

Variant report

Variant rs3897841
Chromosome Location chr9:100355813-100355814
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:100333600-100361800 Weak transcription Gastric stomach
2 chr9:100334200-100356000 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr9:100334400-100356000 Weak transcription Brain Cingulate Gyrus brain
4 chr9:100334400-100356400 Weak transcription HSMMtube muscle
5 chr9:100335600-100356600 Weak transcription Brain Angular Gyrus brain
6 chr9:100336200-100356200 Weak transcription Aorta Aorta
7 chr9:100336200-100360000 Weak transcription Brain Substantia Nigra brain
8 chr9:100338200-100356200 Weak transcription Brain Inferior Temporal Lobe brain
9 chr9:100338200-100356800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr9:100338400-100356000 Weak transcription Brain Anterior Caudate brain
11 chr9:100338400-100361600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr9:100338600-100360800 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr9:100341200-100358400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr9:100341600-100356000 Weak transcription Right Atrium heart
15 chr9:100346200-100360800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr9:100348800-100384000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr9:100349800-100356600 Weak transcription Brain Hippocampus Middle brain
18 chr9:100350400-100361800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr9:100350600-100360800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr9:100350800-100356600 Weak transcription Pancreas Pancrea
21 chr9:100351200-100361800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr9:100353000-100362800 Weak transcription Esophagus oesophagus
23 chr9:100353200-100362200 Enhancers Fetal Brain Male brain
24 chr9:100353200-100363200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr9:100353400-100359200 Strong transcription K562 blood
26 chr9:100353600-100356200 Enhancers Fetal Brain Female brain
27 chr9:100353600-100356200 Strong transcription Ovary ovary
28 chr9:100353600-100358600 Enhancers Fetal Heart heart
29 chr9:100353800-100356200 Weak transcription Fetal Muscle Trunk muscle
30 chr9:100354000-100360800 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr9:100354000-100360800 Weak transcription Lung lung
32 chr9:100354200-100360600 Weak transcription GM12878-XiMat blood
33 chr9:100354800-100357400 Enhancers Fetal Muscle Leg muscle
34 chr9:100354800-100363000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr9:100355000-100360800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr9:100355000-100360800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr9:100355000-100360800 Enhancers Skeletal Muscle Male skeletal muscle
38 chr9:100355400-100356800 Genic enhancers Stomach Smooth Muscle stomach
39 chr9:100355400-100357000 Enhancers Psoas Muscle Psoas
40 chr9:100355400-100360800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr9:100355600-100356800 Enhancers Skeletal Muscle Female skeletal muscle
42 chr9:100355600-100357000 Enhancers Left Ventricle heart
43 chr9:100355600-100357400 Enhancers Rectal Smooth Muscle rectum
44 chr9:100355600-100357800 Enhancers Colon Smooth Muscle Colon
45 chr9:100355600-100359200 Weak transcription Brain Germinal Matrix brain
46 chr9:100355800-100357000 Enhancers Right Ventricle heart

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Last update: Aug 31, 2015